Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MTND3P17-201ENST00000416968 344 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.36□□□□□ -2.19
USF1P22415 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.36□□□□□ -2.19
USF1P22415 AL513185.2-201ENST00000425543 193 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL669831.1-202ENST00000428504 417 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL596276.1-201ENST00000434465 418 ntBASIC1.36□□□□□ -2.19
USF1P22415 GTF2IP13-201ENST00000438487 386 ntBASIC1.36□□□□□ -2.19
USF1P22415 MTND2P4-201ENST00000445034 1004 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL360221.1-201ENST00000445989 335 ntBASIC1.36□□□□□ -2.19
USF1P22415 GAPDHP17-201ENST00000449858 1001 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL033528.1-201ENST00000453780 140 ntBASIC1.36□□□□□ -2.19
USF1P22415 AC112492.4-201ENST00000456549 352 ntBASIC1.36□□□□□ -2.19
USF1P22415 RNU7-95P-201ENST00000459222 64 ntBASIC1.36□□□□□ -2.19
USF1P22415 AC021146.2-201ENST00000504736 556 ntBASIC1.36□□□□□ -2.19
USF1P22415 SNORD27.1-201ENST00000516319 72 ntBASIC1.36□□□□□ -2.19
USF1P22415 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.36□□□□□ -2.19
USF1P22415 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.36□□□□□ -2.19
USF1P22415 AC023050.3-201ENST00000541142 333 ntBASIC1.36□□□□□ -2.19
USF1P22415 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.36□□□□□ -2.19
USF1P22415 MIR3169-201ENST00000578032 83 ntBASIC1.36□□□□□ -2.19
USF1P22415 BNIP3P16-201ENST00000589779 534 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL590229.1-201ENST00000603497 542 ntBASIC1.36□□□□□ -2.19
USF1P22415 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.36□□□□□ -2.19
USF1P22415 uc_338.11-201ENST00000619132 160 ntBASIC1.36□□□□□ -2.19
USF1P22415 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.36□□□□□ -2.19
USF1P22415 AC008993.2-201ENST00000631744 806 ntBASIC1.36□□□□□ -2.19
USF1P22415 SEPT14P19-203ENST00000633205 211 ntBASIC1.36□□□□□ -2.19
USF1P22415 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.36□□□□□ -2.19
USF1P22415 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
USF1P22415 AP000560.1-201ENST00000624150 1937 ntBASIC1.35□□□□□ -2.19
USF1P22415 RNU6-1141P-201ENST00000364520 107 ntBASIC1.35□□□□□ -2.19
USF1P22415 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
USF1P22415 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
USF1P22415 SNORA40.3-201ENST00000390964 122 ntBASIC1.35□□□□□ -2.19
USF1P22415 RNU6-955P-201ENST00000410497 104 ntBASIC1.35□□□□□ -2.19
USF1P22415 RNU6-293P-201ENST00000411259 106 ntBASIC1.35□□□□□ -2.19
USF1P22415 RNU6-195P-201ENST00000411352 109 ntBASIC1.35□□□□□ -2.19
USF1P22415 AL162395.1-201ENST00000457882 422 ntBASIC1.35□□□□□ -2.19
USF1P22415 AC145146.1-201ENST00000496370 254 ntBASIC1.35□□□□□ -2.19
USF1P22415 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.35□□□□□ -2.19
USF1P22415 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.35□□□□□ -2.19
USF1P22415 RNVU1-2-201ENST00000516326 135 ntBASIC1.35□□□□□ -2.19
USF1P22415 RNA5SP503-201ENST00000517047 117 ntBASIC1.35□□□□□ -2.19
USF1P22415 RNA5SP490-201ENST00000517141 136 ntBASIC1.35□□□□□ -2.19
USF1P22415 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
USF1P22415 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.35□□□□□ -2.19
USF1P22415 COPS8P3-201ENST00000526024 482 ntBASIC1.35□□□□□ -2.19
USF1P22415 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.35□□□□□ -2.19
USF1P22415 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.35□□□□□ -2.19
USF1P22415 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.35□□□□□ -2.19
USF1P22415 AC008945.2-201ENST00000606056 604 ntBASIC1.35□□□□□ -2.19
USF1P22415 MIR98-201ENST00000606724 119 ntBASIC1.35□□□□□ -2.19
USF1P22415 AC104073.3-201ENST00000610942 955 ntBASIC1.35□□□□□ -2.19
USF1P22415 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.35□□□□□ -2.19
USF1P22415 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.35□□□□□ -2.19
USF1P22415 SNORD98-201ENST00000636377 67 ntBASIC1.35□□□□□ -2.19
USF1P22415 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.35□□□□□ -2.19
USF1P22415 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
USF1P22415 AL391987.6-201ENST00000305671 199 ntBASIC1.34□□□□□ -2.19
USF1P22415 RNU1-42P-201ENST00000364033 160 ntBASIC1.34□□□□□ -2.19
USF1P22415 RNU6-60P-201ENST00000364792 103 ntBASIC1.34□□□□□ -2.19
USF1P22415 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
USF1P22415 AC068050.1-201ENST00000394891 380 ntBASIC1.34□□□□□ -2.19
USF1P22415 RNU4-46P-201ENST00000410818 138 ntBASIC1.34□□□□□ -2.19
USF1P22415 NCOR1P3-201ENST00000420479 303 ntBASIC1.34□□□□□ -2.19
USF1P22415 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.34□□□□□ -2.19
USF1P22415 HMGN2P18-201ENST00000450680 270 ntBASIC1.34□□□□□ -2.19
USF1P22415 MTCO3P7-201ENST00000510008 774 ntBASIC1.34□□□□□ -2.19
USF1P22415 LRRC34P2-201ENST00000514850 553 ntBASIC1.34□□□□□ -2.19
USF1P22415 RNU6-759P-201ENST00000516740 103 ntBASIC1.34□□□□□ -2.19
USF1P22415 MTND1P24-201ENST00000552175 861 ntBASIC1.34□□□□□ -2.19
USF1P22415 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.34□□□□□ -2.19
USF1P22415 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.34□□□□□ -2.19
USF1P22415 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.34□□□□□ -2.19
USF1P22415 VN1R107P-201ENST00000601784 209 ntBASIC1.34□□□□□ -2.19
USF1P22415 BX248123.2-201ENST00000606318 124 ntBASIC1.34□□□□□ -2.19
USF1P22415 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
USF1P22415 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.34□□□□□ -2.19
USF1P22415 AL590240.4-201ENST00000616908 390 ntBASIC1.34□□□□□ -2.19
USF1P22415 AL391262.2-201ENST00000622466 494 ntBASIC1.34□□□□□ -2.19
USF1P22415 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.34□□□□□ -2.19
USF1P22415 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
USF1P22415 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.34□□□□□ -2.2
USF1P22415 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.34□□□□□ -2.2
USF1P22415 SNORD114-6-201ENST00000364393 72 ntBASIC1.33□□□□□ -2.2
USF1P22415 SNORA25.9-201ENST00000365087 128 ntBASIC1.33□□□□□ -2.2
USF1P22415 Y_RNA.332-201ENST00000365271 113 ntBASIC1.33□□□□□ -2.2
USF1P22415 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.33□□□□□ -2.2
USF1P22415 RNU6-26P-201ENST00000383985 107 ntBASIC1.33□□□□□ -2.2
USF1P22415 RNU6-1029P-201ENST00000384109 107 ntBASIC1.33□□□□□ -2.2
USF1P22415 RNU6-43P-201ENST00000384302 107 ntBASIC1.33□□□□□ -2.2
USF1P22415 Y_RNA.480-201ENST00000384364 102 ntBASIC1.33□□□□□ -2.2
USF1P22415 MIR499A-201ENST00000384903 122 ntBASIC1.33□□□□□ -2.2
USF1P22415 MIR517C-201ENST00000385103 95 ntBASIC1.33□□□□□ -2.2
USF1P22415 SNORA12-201ENST00000391162 147 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.33□□□□□ -2.2
USF1P22415 CYCSP46-201ENST00000423569 204 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC010975.2-201ENST00000427781 588 ntBASIC1.33□□□□□ -2.2
USF1P22415 AC244670.1-201ENST00000436879 112 ntBASIC1.33□□□□□ -2.2
USF1P22415 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms