Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC074344.1-201ENST00000512823 224 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 SNORA31.2-201ENST00000516019 134 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 RN7SKP265-201ENST00000516448 223 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.42□□□□□ -2.34
CXCL1P09341 AC009712.1-201ENST00000564938 316 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 BNIP3P10-201ENST00000605360 577 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 snoU13.31-201ENST00000607291 104 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.42□□□□□ -2.34
CXCL1P09341 AC084824.5-201ENST00000612009 413 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 AL359547.2-201ENST00000615810 418 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC0.42□□□□□ -2.34
CXCL1P09341 AL163152.1-201ENST00000642001 374 ntBASIC0.42□□□□□ -2.34
CXCL1P09341 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
CXCL1P09341 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.42□□□□□ -2.34
CXCL1P09341 RNU6-78P-201ENST00000362897 107 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 Y_RNA.124-201ENST00000363339 93 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 Y_RNA.192-201ENST00000363977 102 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 RNY3P13-201ENST00000365542 102 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 MIR520E-201ENST00000384867 87 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 RPS26P5-201ENST00000418544 335 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 Z82205.1-201ENST00000428456 297 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 RPL23AP30-201ENST00000432419 501 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 TOMM22P6-201ENST00000465035 409 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 RPS27P22-201ENST00000478056 241 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 RAP1BP2-201ENST00000478270 544 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.41□□□□□ -2.34
CXCL1P09341 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 AC109445.1-201ENST00000512356 383 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 SNORD79.1-201ENST00000516069 84 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 AC025423.5-201ENST00000550230 219 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.41□□□□□ -2.34
CXCL1P09341 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.41□□□□□ -2.34
CXCL1P09341 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC0.41□□□□□ -2.34
CXCL1P09341 AC103706.2-201ENST00000638080 240 ntBASIC0.41□□□□□ -2.34
CXCL1P09341 ATP8A2P2-201ENST00000437678 1568 ntBASIC0.4□□□□□ -2.34
CXCL1P09341 MIR544A-201ENST00000384855 91 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 AP000275.1-201ENST00000411943 390 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 HMGN1P14-201ENST00000412459 517 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 RPS25P9-201ENST00000435591 252 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.4□□□□□ -2.35
CXCL1P09341 AC010531.2-201ENST00000465012 153 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.4□□□□□ -2.35
CXCL1P09341 RNU2-10P-201ENST00000516375 211 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 RNU6-856P-201ENST00000516959 98 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 MTND3P13-201ENST00000574391 343 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 RNU6-88P-201ENST00000606801 100 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 AC104465.1-201ENST00000611365 139 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 AC026585.1-201ENST00000619582 524 ntBASIC0.4□□□□□ -2.35
CXCL1P09341 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
CXCL1P09341 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
CXCL1P09341 RNA5SP361-201ENST00000362686 118 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 SNORA72.2-201ENST00000365028 127 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 SNORA4.2-201ENST00000365313 147 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 MIR508-201ENST00000384857 115 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 MIR10B-201ENST00000385011 110 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.39□□□□□ -2.35
CXCL1P09341 RNA5SP255-201ENST00000516370 107 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.39□□□□□ -2.35
CXCL1P09341 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.39□□□□□ -2.35
CXCL1P09341 AC068587.4-201ENST00000533893 186 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AC023050.2-201ENST00000544968 387 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC0.39□□□□□ -2.35
CXCL1P09341 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.39□□□□□ -2.35
CXCL1P09341 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.39□□□□□ -2.35
CXCL1P09341 MIR4742-201ENST00000581069 85 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AC008752.3-201ENST00000588113 712 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AC008507.2-201ENST00000588402 1176 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 HMGN1P30-201ENST00000589286 268 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 RPL17P51-201ENST00000605218 238 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AL359821.1-201ENST00000605519 182 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AC009229.3-201ENST00000608056 282 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 AC008147.4-201ENST00000617570 1204 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 SNORD98-201ENST00000636377 67 ntBASIC0.39□□□□□ -2.35
CXCL1P09341 RNU6-1179P-201ENST00000384667 107 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 MIR605-201ENST00000385078 83 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 RNA5SP201-201ENST00000410316 124 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 RPS3AP37-201ENST00000419176 745 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.38□□□□□ -2.35
CXCL1P09341 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC0.38□□□□□ -2.35
CXCL1P09341 MTCO3P18-201ENST00000440206 761 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.38□□□□□ -2.35
CXCL1P09341 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.38□□□□□ -2.35
CXCL1P09341 BET1P1-201ENST00000482276 359 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 MTCO3P7-201ENST00000510008 774 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 RNA5SP458-201ENST00000516188 119 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 RNA5SP121-201ENST00000516537 101 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.38□□□□□ -2.35
CXCL1P09341 AC004812.1-201ENST00000540773 146 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.38□□□□□ -2.35
CXCL1P09341 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.38□□□□□ -2.35
CXCL1P09341 MIR4524B-201ENST00000581569 115 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.38□□□□□ -2.35
CXCL1P09341 AC016727.1-205ENST00000605437 569 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 AP001596.2-201ENST00000608410 312 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 AC072039.2-201ENST00000608883 439 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 AC131235.4-201ENST00000609288 620 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 AC104073.3-201ENST00000610942 955 ntBASIC0.38□□□□□ -2.35
CXCL1P09341 RNY4P24-201ENST00000362735 96 ntBASIC0.37□□□□□ -2.35
CXCL1P09341 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms