Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 COPS8P3-201ENST00000526024 482 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 MIR3913-1-201ENST00000577744 102 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 AC107304.1-201ENST00000604229 296 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 AP000654.2-201ENST00000605633 586 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 AC002044.1-201ENST00000606707 158 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 AL590240.4-201ENST00000616908 390 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 AC008993.2-201ENST00000631744 806 ntBASIC1.3□□□□□ -2.2
MT-ND4P03905 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
MT-ND4P03905 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
MT-ND4P03905 RNU6-23P-201ENST00000363283 107 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 RNU4-91P-201ENST00000364778 135 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 MIR30A-201ENST00000385092 71 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 SNORA48.1-201ENST00000390879 135 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
MT-ND4P03905 PIGFP2-201ENST00000421400 651 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.29□□□□□ -2.2
MT-ND4P03905 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AC244505.5-201ENST00000443639 207 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AL357134.1-201ENST00000445848 426 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AL035666.1-201ENST00000446195 348 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 snoU13.15-201ENST00000459407 104 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 MTND3P7-201ENST00000474435 343 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AC079382.1-201ENST00000493346 557 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AC010486.2-201ENST00000505572 483 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 LRRC34P2-201ENST00000514850 553 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 SNORA31.16-201ENST00000516773 139 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 SNORA25.17-201ENST00000517184 124 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AC109479.2-201ENST00000517842 174 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.29□□□□□ -2.2
MT-ND4P03905 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.29□□□□□ -2.2
MT-ND4P03905 MIR3169-201ENST00000578032 83 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 MIR3683-201ENST00000580847 82 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 BNIP3P16-201ENST00000589779 534 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AC110760.3-201ENST00000598794 467 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 Z94722.1-201ENST00000604328 474 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 AL161722.3-201ENST00000605789 2983 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
MT-ND4P03905 AC009161.2-201ENST00000624626 138 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
MT-ND4P03905 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.29□□□□□ -2.2
MT-ND4P03905 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
MT-ND4P03905 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.29□□□□□ -2.2
MT-ND4P03905 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU6-1141P-201ENST00000364520 107 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU6-142P-201ENST00000384019 107 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU6-434P-201ENST00000384376 107 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU6-160P-201ENST00000384591 107 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AL357139.1-201ENST00000407792 426 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU2-9P-201ENST00000410194 145 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNA5SP100-201ENST00000410903 110 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNA5SP59-201ENST00000410922 110 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AL117339.3-201ENST00000418733 162 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AL590135.1-201ENST00000422215 156 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AC019205.3-201ENST00000424573 156 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AC244670.1-201ENST00000436879 112 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AC016700.2-201ENST00000446011 156 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 HMGN2P18-201ENST00000450680 270 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AMD1P1-201ENST00000457220 922 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 SCARNA18-201ENST00000459004 134 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNU6-333P-201ENST00000459117 107 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AC015911.1-201ENST00000495111 156 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AC116337.1-201ENST00000509680 687 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 Y_RNA.717-201ENST00000517106 92 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 RNA5SP490-201ENST00000517141 136 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AP002963.1-201ENST00000530590 184 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AGGF1P4-201ENST00000568249 801 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.28□□□□□ -2.2
MT-ND4P03905 AC091805.2-201ENST00000603848 235 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 uc_338.11-201ENST00000619132 160 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.28□□□□□ -2.2
MT-ND4P03905 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.28□□□□□ -2.2
MT-ND4P03905 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
MT-ND4P03905 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.27□□□□□ -2.21
MT-ND4P03905 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.27□□□□□ -2.21
MT-ND4P03905 SNORD32A-201ENST00000364805 84 ntBASIC1.27□□□□□ -2.21
MT-ND4P03905 Y_RNA.332-201ENST00000365271 113 ntBASIC1.27□□□□□ -2.21
MT-ND4P03905 Y_RNA.480-201ENST00000384364 102 ntBASIC1.27□□□□□ -2.21
MT-ND4P03905 MIR23A-201ENST00000385245 73 ntBASIC1.27□□□□□ -2.21
MT-ND4P03905 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
MT-ND4P03905 RPS29P13-201ENST00000402041 169 ntBASIC1.27□□□□□ -2.21
MT-ND4P03905 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.27□□□□□ -2.21
MT-ND4P03905 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.27□□□□□ -2.21
MT-ND4P03905 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms