Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 RNU6-552P-201ENST00000362869 119 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 RNU6-1120P-201ENST00000362988 108 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 RNU6-72P-201ENST00000384285 79 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 SNORD116-4-201ENST00000384733 96 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 RPS12P24-201ENST00000412619 387 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC016831.2-201ENST00000417179 352 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC112771.1-201ENST00000463581 102 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 TOMM22P6-201ENST00000465035 409 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC019235.1-201ENST00000503847 207 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 MTND2P33-201ENST00000506452 1031 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 MTCO3P9-201ENST00000506989 781 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 SNORA19.2-201ENST00000516013 114 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 RNU6-189P-201ENST00000516120 101 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 BTF3P12-201ENST00000519620 469 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 CYCSP27-201ENST00000527643 293 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 ZNF519P2-201ENST00000557032 169 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC010928.2-201ENST00000588017 287 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 BNIP3P16-201ENST00000589779 534 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC073539.2-201ENST00000597113 165 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AL713866.2-201ENST00000603579 219 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 NUTF2P8-201ENST00000604593 363 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AC008536.2-201ENST00000607284 349 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AL359880.1-201ENST00000621879 266 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AL031601.2-202ENST00000622650 282 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 AP003400.5-201ENST00000624827 617 ntBASIC1.42□□□□□ -2.18
SHANK1Q9Y566 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.42□□□□□ -2.18
SHANK1Q9Y566 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 Y_RNA.38-201ENST00000362617 102 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SNORD3E-201ENST00000362899 217 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SNORD115-7-201ENST00000365306 82 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RNA5SP240-201ENST00000365355 128 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 Y_RNA.381-201ENST00000365666 102 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RNU6-190P-201ENST00000384154 102 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SNORA75-201ENST00000384158 137 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 MIR578-201ENST00000384828 96 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 MIR627-201ENST00000384979 97 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC006026.2-201ENST00000457376 180 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RN7SL274P-201ENST00000492268 272 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 Y_RNA.654-201ENST00000497848 106 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 LRRC34P2-201ENST00000514850 553 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SNORD60.2-201ENST00000516883 86 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RNU2-46P-201ENST00000517038 113 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 HIF1AP1-201ENST00000553642 175 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AL353770.2-201ENST00000620024 78 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 U6.99-201ENST00000637524 83 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC068137.3-201ENST00000639191 341 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SNORD14B-201ENST00000364533 90 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SNORD48-201ENST00000364953 64 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RNU4-66P-201ENST00000365199 138 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 Y_RNA.436-201ENST00000384097 102 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RNU6-1119P-201ENST00000384349 108 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 RNU6-192P-201ENST00000391253 100 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 SUMO2P12-201ENST00000405924 140 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 U3.40-201ENST00000408706 208 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC008526.1-201ENST00000509149 338 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 MIR514B-201ENST00000516774 80 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 COPS8P3-201ENST00000526024 482 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC109635.3-201ENST00000529536 185 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC007375.1-201ENST00000554513 578 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.41□□□□□ -2.18
SHANK1Q9Y566 MIR4775-201ENST00000581168 75 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC007014.2-201ENST00000615581 479 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 AC022709.1-201ENST00000615967 87 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 DUXAP9-208ENST00000622815 614 ntBASIC1.41□□□□□ -2.18
SHANK1Q9Y566 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.18
SHANK1Q9Y566 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SHANK1Q9Y566 RNU6-512P-201ENST00000364438 103 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 SNORA68.1-201ENST00000364537 132 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 RNU6-1280P-201ENST00000365211 107 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 SNORD37.1-201ENST00000390968 65 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 RNU6-1158P-201ENST00000391167 107 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 RNU6-648P-201ENST00000410190 107 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.4□□□□□ -2.19
SHANK1Q9Y566 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.4□□□□□ -2.19
SHANK1Q9Y566 RNU7-182P-201ENST00000459009 62 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.4□□□□□ -2.19
SHANK1Q9Y566 AC023141.11-201ENST00000508864 202 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 AC010186.2-204ENST00000537668 439 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 HMGB1P33-201ENST00000563485 527 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 AL391646.1-201ENST00000603860 190 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 AC025449.1-201ENST00000603896 529 ntBASIC1.4□□□□□ -2.19
SHANK1Q9Y566 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms