Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.402-201ENST00000383972 102 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 SNORA67.4-201ENST00000384688 142 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
VPS28Q9UK41 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS28Q9UK41 MTCO1P20-201ENST00000425366 358 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RPL23AP95-201ENST00000426806 265 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 AC078809.1-201ENST00000427601 140 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 AL359672.1-201ENST00000442302 409 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.47□□□□□ -2.01
VPS28Q9UK41 AC091435.1-201ENST00000505442 584 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNA5SP24-201ENST00000516478 95 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 SNORA31.11-201ENST00000516528 139 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNU7-193P-201ENST00000516723 65 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNA5SP137-201ENST00000516833 135 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 RNU6-667P-201ENST00000517186 102 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 AC022616.8-201ENST00000533569 253 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 AC026271.5-201ENST00000577873 130 ntBASIC2.47□□□□□ -2.01
VPS28Q9UK41 AC092268.1-201ENST00000342691 405 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 RNA5SP289-201ENST00000362332 137 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 RNU6-451P-201ENST00000362921 107 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 RNU6-142P-201ENST00000384019 107 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 SNORA41-201ENST00000384675 132 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 SNORA11.2-201ENST00000408318 127 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 RNU4-26P-201ENST00000410270 107 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 Y_RNA.597-201ENST00000410463 100 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AP000275.1-201ENST00000411943 390 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AL590135.1-201ENST00000422215 156 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC019205.3-201ENST00000424573 156 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 CBX3P6-201ENST00000430257 527 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC016700.2-201ENST00000446011 156 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AL031659.1-201ENST00000447075 539 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC015911.1-201ENST00000495111 156 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC016632.1-201ENST00000503994 196 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC008413.1-201ENST00000511864 177 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS28Q9UK41 TPRKBP2-201ENST00000565969 475 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 BNIP3P25-201ENST00000596023 559 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 U4.5-201ENST00000617137 123 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 MIR203B-201ENST00000636080 86 ntBASIC2.46□□□□□ -2.02
VPS28Q9UK41 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS28Q9UK41 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 RNU6-1090P-201ENST00000364065 94 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 RNU6-1329P-201ENST00000365664 107 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 RNU6-214P-201ENST00000384130 107 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 SNORD23.1-201ENST00000408212 104 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 AL133396.1-201ENST00000432048 687 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 AC026436.1-201ENST00000510537 270 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 AC107222.1-201ENST00000510899 637 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 AL031274.2-201ENST00000599419 203 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 SNRPGP17-201ENST00000603780 214 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 AC063943.3-201ENST00000615562 356 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 AC012640.5-201ENST00000623897 319 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 MIR1291-201ENST00000627649 87 ntBASIC2.45□□□□□ -2.02
VPS28Q9UK41 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.45□□□□□ -2.02
VPS28Q9UK41 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 Y_RNA.38-201ENST00000362617 102 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 RNA5SP126-201ENST00000365092 109 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 RNU6-611P-201ENST00000384276 104 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 RNU6-1215P-201ENST00000384441 102 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 SNORA26.3-201ENST00000391119 136 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 MRPS10P2-201ENST00000431226 381 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 MTND1P34-201ENST00000438556 671 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC083904.1-201ENST00000487828 231 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC008628.2-201ENST00000502605 298 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 RNA5SP82-201ENST00000516707 92 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC104576.1-201ENST00000524225 88 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC087241.2-201ENST00000535801 324 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AP002770.2-201ENST00000543613 532 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC007375.1-201ENST00000554513 578 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC103810.6-201ENST00000606708 136 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC064836.2-201ENST00000609491 462 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 AC046143.2-201ENST00000609789 160 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 MTND4P23-201ENST00000447723 1363 ntBASIC2.44□□□□□ -2.02
VPS28Q9UK41 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.44□□□□□ -2.02
VPS28Q9UK41 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.43□□□□□ -2.02
VPS28Q9UK41 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
VPS28Q9UK41 RNU4-15P-201ENST00000362613 141 ntBASIC2.43□□□□□ -2.02
VPS28Q9UK41 SNORD114-30-201ENST00000364448 72 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms