Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-1038P-201ENST00000516516 104 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 RNA5SP137-201ENST00000516833 135 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 SNORA31.25-201ENST00000517242 134 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.99□□□□□ -2.09
LHX3Q9UBR4 COPS8P3-201ENST00000526024 482 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AC104383.1-201ENST00000530297 370 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 NDUFA5P6-201ENST00000542110 379 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AC107304.1-201ENST00000604229 296 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AP001330.5-201ENST00000607176 411 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 HULC.1-201ENST00000612720 240 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AC073534.2-201ENST00000620377 381 ntBASIC1.99□□□□□ -2.09
LHX3Q9UBR4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.99□□□□□ -2.09
LHX3Q9UBR4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
LHX3Q9UBR4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 SNORA69-201ENST00000383895 132 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 RNU6-546P-201ENST00000383991 107 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 RNU2-32P-201ENST00000411193 191 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 WARS2P1-201ENST00000429678 537 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 DNAJC19P4-201ENST00000440115 345 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC087884.1-201ENST00000469738 328 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 YWHAEP4-201ENST00000505390 198 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 RNA5SP401-201ENST00000515920 127 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 RNU6-667P-201ENST00000517186 102 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC107953.1-201ENST00000522216 297 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AP000763.2-201ENST00000540641 163 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC245505.1-201ENST00000556398 224 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC026271.5-201ENST00000577873 130 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC002984.1-201ENST00000591692 448 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AL031274.2-201ENST00000599419 203 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 VN1R107P-201ENST00000601784 209 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC022202.1-201ENST00000613515 211 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 AC009487.4-201ENST00000624969 3585 ntBASIC1.98□□□□□ -2.09
LHX3Q9UBR4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 Y_RNA.41-201ENST00000362646 102 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNU6-1285P-201ENST00000363480 105 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNU6-1085P-201ENST00000363576 107 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNU6-1322P-201ENST00000364309 107 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNU4-40P-201ENST00000364351 143 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 Y_RNA.318-201ENST00000365131 97 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 Y_RNA.481-201ENST00000384373 102 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNA5SP219-201ENST00000390940 113 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNA5SP338-201ENST00000410495 85 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 USP9YP27-201ENST00000418455 438 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AL117339.3-201ENST00000418733 162 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 MORF4L1P6-201ENST00000418771 268 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AL590556.1-201ENST00000423231 483 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 HMGN2P3-201ENST00000433603 273 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 HMGN2P5-201ENST00000436882 273 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 snoU13.26-201ENST00000459452 105 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AC083798.1-201ENST00000472671 131 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNU5F-2P-201ENST00000516066 82 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 CYCSP27-201ENST00000527643 293 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AC090115.3-201ENST00000553218 849 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AC233702.2-202ENST00000562547 291 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 MIR4424-201ENST00000585257 86 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 RNU6-85P-201ENST00000605989 107 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AC241585.2-209ENST00000638217 143 ntBASIC1.97□□□□□ -2.09
LHX3Q9UBR4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LHX3Q9UBR4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU6-944P-201ENST00000364023 107 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNA5SP37-201ENST00000365420 130 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU6-827P-201ENST00000365553 106 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU6-692P-201ENST00000384496 107 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU6-780P-201ENST00000391030 104 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RPS29P13-201ENST00000402041 169 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 HMGB3P2-201ENST00000411913 584 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 MTCO3P41-201ENST00000414801 328 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AL589823.1-201ENST00000429577 183 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RPS15AP10-201ENST00000432472 382 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.96□□□□□ -2.1
LHX3Q9UBR4 RNU6-261P-201ENST00000459506 102 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 MTCO3P38-201ENST00000468910 766 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 SNRPGP7-201ENST00000469016 106 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC107032.1-201ENST00000485945 480 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC090255.1-201ENST00000495779 349 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC022447.4-201ENST00000504053 364 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AK3P2-201ENST00000507976 429 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC009646.1-201ENST00000510455 318 ntBASIC1.96□□□□□ -2.1
LHX3Q9UBR4 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms