Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 AC010525.2-201ENST00000590920 195 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 AL162413.1-201ENST00000603198 110 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 AL357078.3-201ENST00000607528 618 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 AC008121.3-201ENST00000618726 433 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 AC103705.1-201ENST00000619013 241 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 OR4G1P-203ENST00000641984 1631 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 ZNF355P-201ENST00000427301 3216 ntBASIC1.9□□□□□ -2.11
EXOSC3Q9NQT5 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-82P-201ENST00000363970 107 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 Y_RNA.231-201ENST00000364358 102 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 SNORA6-201ENST00000384033 151 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-43P-201ENST00000384302 107 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 Y_RNA.500-201ENST00000384466 111 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-1222P-201ENST00000384615 107 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 MIR514A2-201ENST00000385131 88 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 MIR514A3-201ENST00000385132 88 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 CBX3P9-201ENST00000402326 552 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC009238.1-201ENST00000442165 424 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 IFNA11P-201ENST00000446352 526 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC009237.6-201ENST00000446969 424 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AL021397.1-201ENST00000451806 248 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 snoU13.14-201ENST00000459372 104 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-1208P-201ENST00000459588 107 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 Y_RNA.654-201ENST00000497848 106 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 SNORA4.4-201ENST00000515921 135 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 RNU1-40P-201ENST00000516816 164 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 RNU1-97P-201ENST00000516872 164 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 COPS8P3-201ENST00000526024 482 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 EIF1P4-201ENST00000572664 335 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 BNIP3P16-201ENST00000589779 534 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC002984.1-201ENST00000591692 448 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC009314.1-201ENST00000603871 304 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC022202.1-201ENST00000613515 211 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC063943.3-201ENST00000615562 356 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC064859.1-201ENST00000624741 174 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 MIR219B-201ENST00000637023 88 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 AC068137.3-201ENST00000639191 341 ntBASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
EXOSC3Q9NQT5 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 Y_RNA.167-201ENST00000363735 109 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-944P-201ENST00000364023 107 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AL445529.1-201ENST00000398713 389 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 SNORA3.2-201ENST00000408221 125 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RN7SKP223-201ENST00000410582 62 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RN7SKP192-201ENST00000411291 327 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 MTCO1P20-201ENST00000425366 358 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 IPO7P1-201ENST00000442031 636 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC124916.1-201ENST00000444020 547 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC096638.1-201ENST00000444678 216 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC083904.1-201ENST00000487828 231 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RPL30P1-201ENST00000488676 339 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC018868.1-201ENST00000491307 315 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC008549.1-201ENST00000512900 643 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 SNORA19.2-201ENST00000516013 114 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RNU5F-2P-201ENST00000516066 82 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-1069P-201ENST00000516612 133 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 SNORA48.11-201ENST00000517015 89 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC104576.1-201ENST00000524225 88 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AP005597.4-201ENST00000526762 229 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 MIR5692C1-201ENST00000585309 91 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-89P-201ENST00000606519 100 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 U4atac.1-201ENST00000618345 95 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 MIR1321-201ENST00000637766 79 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 ZNF658B-202ENST00000615961 3375 ntBASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
EXOSC3Q9NQT5 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 RNU6-522P-201ENST00000364497 107 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 SNORA25B-201ENST00000365507 128 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 RPS29P13-201ENST00000402041 169 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 Z98742.3-201ENST00000418637 326 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 DPH3P2-201ENST00000422618 250 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 AC091885.1-201ENST00000506658 268 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 AC008413.1-201ENST00000511864 177 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 SNORD60.2-201ENST00000516883 86 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 IGKV3-31-201ENST00000523109 329 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 CYCSP26-201ENST00000534107 320 ntBASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.87□□□□□ -2.11
EXOSC3Q9NQT5 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 327.7 ms