Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.09□□□□□ -2.07
LIME1Q9H400 AC112771.1-201ENST00000463581 102 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC092989.1-201ENST00000481235 277 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.09□□□□□ -2.07
LIME1Q9H400 RPL23AP49-201ENST00000492925 468 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 TRBVA-201ENST00000498804 316 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.09□□□□□ -2.07
LIME1Q9H400 SMURF2P1-201ENST00000514992 481 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC010186.2-204ENST00000537668 439 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.09□□□□□ -2.07
LIME1Q9H400 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.09□□□□□ -2.07
LIME1Q9H400 MIR1273D-201ENST00000577266 86 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC100830.2-201ENST00000581636 240 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC060780.3-201ENST00000589464 80 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AL357078.3-201ENST00000607528 618 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC069294.1-201ENST00000608397 350 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC068944.2-201ENST00000610373 403 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 AC104237.2-201ENST00000612456 443 ntBASIC2.09□□□□□ -2.07
LIME1Q9H400 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
LIME1Q9H400 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.09□□□□□ -2.08
LIME1Q9H400 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LIME1Q9H400 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.08□□□□□ -2.08
LIME1Q9H400 MIR21-201ENST00000362134 72 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 Y_RNA.40-201ENST00000362645 93 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 SNORD114-19-201ENST00000363072 75 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 RNU6-254P-201ENST00000363377 107 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 Y_RNA.135-201ENST00000363439 95 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 Y_RNA.248-201ENST00000364501 109 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 RNU6-1329P-201ENST00000365664 107 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
LIME1Q9H400 MIR186-201ENST00000384988 86 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 SNORD73A-201ENST00000386062 65 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC008267.5-201ENST00000424928 265 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AL591043.1-201ENST00000432461 424 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 MTATP6P13-201ENST00000438531 667 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC243964.1-201ENST00000441814 261 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AL031274.1-201ENST00000450334 232 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC069439.1-201ENST00000494739 167 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.08□□□□□ -2.08
LIME1Q9H400 RNU6-323P-201ENST00000521915 107 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AL133241.1-201ENST00000556832 487 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC073410.2-201ENST00000603240 332 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AL353997.5-201ENST00000618886 171 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LIME1Q9H400 AL160394.1-201ENST00000624765 724 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC135776.4-201ENST00000624300 1904 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.08□□□□□ -2.08
LIME1Q9H400 AC002543.1-201ENST00000299783 1954 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 AC069528.2-201ENST00000624849 1991 ntBASIC2.08□□□□□ -2.08
LIME1Q9H400 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
LIME1Q9H400 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
LIME1Q9H400 ZNF271P-202ENST00000465539 1970 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.07□□□□□ -2.08
LIME1Q9H400 SNORD113-7-201ENST00000363762 77 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 RNU6-128P-201ENST00000383976 107 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 RNU1-57P-201ENST00000384491 166 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LIME1Q9H400 HMGN2P35-201ENST00000412164 270 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AIMP1P2-201ENST00000425294 312 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AL513185.2-201ENST00000425543 193 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 CR769767.1-201ENST00000436337 346 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LIME1Q9H400 AC104389.3-201ENST00000445629 235 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.07□□□□□ -2.08
LIME1Q9H400 AC007547.1-201ENST00000462177 490 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.07□□□□□ -2.08
LIME1Q9H400 Y_RNA.673-201ENST00000516306 88 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 SNORA31.15-201ENST00000516771 132 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 RNU6-1314P-201ENST00000517139 104 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AC025423.5-201ENST00000550230 219 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AC103996.1-201ENST00000555468 102 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.07□□□□□ -2.08
LIME1Q9H400 AC091135.1-201ENST00000585943 307 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AP000907.4-201ENST00000604143 237 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LIME1Q9H400 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.07□□□□□ -2.08
LIME1Q9H400 AC009233.1-201ENST00000616477 371 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 AC097372.5-201ENST00000623665 376 ntBASIC2.07□□□□□ -2.08
LIME1Q9H400 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.07□□□□□ -2.08
LIME1Q9H400 AC080100.1-201ENST00000624239 5356 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
LIME1Q9H400 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
LIME1Q9H400 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
LIME1Q9H400 RNU6-529P-201ENST00000363383 104 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RNU6-527P-201ENST00000363425 104 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RNU6-1285P-201ENST00000363480 105 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RNA5SP456-201ENST00000364002 114 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 SNORD32A-201ENST00000364805 84 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 Y_RNA.414-201ENST00000384011 101 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 145.3 ms