Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU6-266P-201ENST00000364225 107 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 SNORA75-201ENST00000384158 137 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 MIR1283-2-201ENST00000408621 87 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 SRIP3-201ENST00000413200 219 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 RPL31P63-201ENST00000422565 375 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 CBX3P6-201ENST00000430257 527 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AL451074.3-201ENST00000437709 472 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 AC245102.2-201ENST00000448956 180 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AC013470.1-201ENST00000453438 462 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 SNRPFP3-201ENST00000457792 225 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 RPL21P99-201ENST00000480369 423 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 PTP4A1P4-201ENST00000512479 322 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AGGF1P4-201ENST00000568249 801 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 AL109918.3-201ENST00000603072 338 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AC091805.2-201ENST00000603848 235 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 AC107304.1-201ENST00000604229 296 ntBASIC1.85□□□□□ -2.11
VPS35Q96QK1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
VPS35Q96QK1 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
VPS35Q96QK1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 RNU6-692P-201ENST00000384496 107 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 MIR676-201ENST00000390702 67 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 RNA5SP465-201ENST00000391195 109 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 RNU6-903P-201ENST00000391270 109 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 RNU2-20P-201ENST00000410425 191 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 AL117339.3-201ENST00000418733 162 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 AL445685.2-201ENST00000422551 342 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 BX510359.4-201ENST00000423750 193 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 AL031274.1-201ENST00000450334 232 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 SNRPGP7-201ENST00000469016 106 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC079140.5-201ENST00000507882 310 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC009646.1-201ENST00000510455 318 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 MRPS17P9-201ENST00000511924 393 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC026407.1-201ENST00000518369 204 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 MIR3122-201ENST00000577243 73 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 MIR4299-201ENST00000577899 72 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 MIR5583-1-201ENST00000580941 59 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 MTATP6P3-201ENST00000581686 676 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC103987.3-201ENST00000582071 292 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AL034555.1-201ENST00000604816 211 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC018889.1-201ENST00000605372 397 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VPS35Q96QK1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
VPS35Q96QK1 MIR3974-201ENST00000637126 96 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 AC241585.2-209ENST00000638217 143 ntBASIC1.84□□□□□ -2.11
VPS35Q96QK1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
VPS35Q96QK1 Y_RNA.399-201ENST00000383955 105 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 RNU6-43P-201ENST00000384302 107 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 RNU6-517P-201ENST00000384362 110 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 MIR583-201ENST00000384846 75 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC068050.1-201ENST00000394891 380 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AF228730.1-201ENST00000397972 663 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS35Q96QK1 AL158823.1-201ENST00000418441 478 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC090960.1-201ENST00000421072 306 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS35Q96QK1 MTND2P29-201ENST00000438595 412 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AL360221.1-201ENST00000445989 335 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.83□□□□□ -2.12
VPS35Q96QK1 RNU7-63P-201ENST00000459054 62 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.83□□□□□ -2.12
VPS35Q96QK1 AL137161.1-201ENST00000532231 390 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AL356057.1-201ENST00000533798 831 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC007375.1-201ENST00000554513 578 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC243960.4-201ENST00000600532 288 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC073648.5-201ENST00000603502 305 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 AC005034.5-201ENST00000604219 466 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 MIR1248-201ENST00000629190 106 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 SNORD98-201ENST00000636377 67 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
VPS35Q96QK1 ELL2P3-201ENST00000457883 1602 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 MTND4P14-201ENST00000435799 1354 ntBASIC1.83□□□□□ -2.12
VPS35Q96QK1 RNU6-1141P-201ENST00000364520 107 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 RNU6-234P-201ENST00000365229 104 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC073464.1-201ENST00000429823 534 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS35Q96QK1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC010486.3-201ENST00000511602 785 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 MTND3P5-201ENST00000512798 333 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC010493.1-201ENST00000513479 292 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 COPS8P3-201ENST00000526024 482 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 HIF1AP1-201ENST00000553642 175 ntBASIC1.82□□□□□ -2.12
VPS35Q96QK1 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.82□□□□□ -2.12
VPS35Q96QK1 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms