Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL022345.1-201ENST00000607292 135 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 uc_338.20-201ENST00000621563 178 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 DUXAP9-208ENST00000622815 614 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 MIR6863-201ENST00000636112 90 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AC068137.3-201ENST00000639191 341 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 AC073869.6-201ENST00000640656 341 ntBASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
ZNF540Q8NDQ6 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.296-201ENST00000364930 108 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-1042P-201ENST00000384204 107 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 OR9R1P-201ENST00000412200 877 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 RPL31P63-201ENST00000422565 375 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 CBX3P6-201ENST00000430257 527 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 HMGN2P3-201ENST00000433603 273 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 GPR143P-201ENST00000434155 205 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 HMGN2P5-201ENST00000436882 273 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC112492.4-201ENST00000456549 352 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC087884.1-201ENST00000469738 328 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC027575.1-201ENST00000481064 460 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 RNA5SP200-201ENST00000516360 103 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AP001893.2-201ENST00000526949 202 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AP001330.5-201ENST00000607176 411 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 Z82243.1-201ENST00000609432 473 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AL158209.2-201ENST00000619266 216 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC026585.1-201ENST00000619582 524 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC009161.2-201ENST00000624626 138 ntBASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
ZNF540Q8NDQ6 AC092881.1-201ENST00000638218 2733 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.6-201ENST00000362350 114 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 RNU1-58P-201ENST00000362413 163 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 RNY1P12-201ENST00000364251 105 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-61P-201ENST00000365528 109 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-641P-201ENST00000384006 107 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 SNORA24.1-201ENST00000384401 135 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-1158P-201ENST00000391167 107 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 BTF3L4P2-201ENST00000392798 346 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MIR1262-201ENST00000408276 93 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 VN1R36P-201ENST00000414936 291 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MTATP6P18-201ENST00000417994 673 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MTCYBP5-201ENST00000423752 1135 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MTND3P21-201ENST00000433774 331 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AL118520.1-201ENST00000450770 291 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AP005435.4-201ENST00000529514 284 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AC104383.1-201ENST00000530297 370 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 OR11H5P-201ENST00000554039 926 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AC007375.1-201ENST00000554513 578 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AC022254.1-201ENST00000567857 235 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MIR3198-2-201ENST00000577868 80 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 AP001596.2-201ENST00000608410 312 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 RMST_6.1-201ENST00000611980 203 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 MIR219B-201ENST00000637023 88 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 ZNF680P1-201ENST00000436625 1469 ntBASIC1.92□□□□□ -2.1
ZNF540Q8NDQ6 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.99-201ENST00000363138 105 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-1097P-201ENST00000363586 107 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-1090P-201ENST00000364065 94 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 Y_RNA.256-201ENST00000364594 104 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-456P-201ENST00000384493 107 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU6-606P-201ENST00000384721 111 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 SNORA11.4-201ENST00000408823 129 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNU2-9P-201ENST00000410194 145 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RNA5SP111-201ENST00000411386 101 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 BX510359.4-201ENST00000423750 193 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 CALM2P2-201ENST00000428512 440 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC002486.1-201ENST00000435098 391 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 UBE2V1P8-201ENST00000437166 265 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 HMGB1P31-201ENST00000437242 427 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 RPL30P1-201ENST00000488676 339 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 MTCO3P9-201ENST00000506989 781 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC009646.1-201ENST00000510455 318 ntBASIC1.91□□□□□ -2.1
ZNF540Q8NDQ6 AC008834.1-201ENST00000511612 175 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 222.4 ms