Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC243829.7-201ENST00000633081 225 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 AC241585.2-209ENST00000638217 143 ntBASIC2.34□□□□□ -2.03
PDLIM3Q53GG5 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
PDLIM3Q53GG5 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.34□□□□□ -2.04
PDLIM3Q53GG5 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.04
PDLIM3Q53GG5 MTND5P30-201ENST00000452896 1731 ntBASIC2.34□□□□□ -2.04
PDLIM3Q53GG5 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.151-201ENST00000363566 112 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU6-1013P-201ENST00000384180 107 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU1-52P-201ENST00000384190 164 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU6-790P-201ENST00000384479 105 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MIR512-1-201ENST00000384913 84 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MIR524-201ENST00000385242 87 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MIR764-201ENST00000390811 85 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU6-220P-201ENST00000390919 107 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MTND3P9-201ENST00000429526 346 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RPS15AP10-201ENST00000432472 382 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MICF-203ENST00000432679 129 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC098614.3-201ENST00000438957 440 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL139109.1-201ENST00000455491 297 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU7-187P-201ENST00000458985 68 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU6-329P-201ENST00000459618 107 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC008571.1-201ENST00000467232 300 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RN7SL297P-201ENST00000483161 293 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AP001025.1-201ENST00000486139 332 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC008549.1-201ENST00000512900 643 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 RNU6-864P-201ENST00000516256 108 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC109479.2-201ENST00000517842 174 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AP000889.2-201ENST00000532684 490 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC087241.2-201ENST00000535801 324 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL121579.1-201ENST00000555129 305 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC105137.2-201ENST00000569073 466 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MIR4790-201ENST00000577799 79 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 MIR3605-201ENST00000583214 100 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC023043.2-201ENST00000589678 1026 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AC016727.1-205ENST00000605437 569 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL138726.1-201ENST00000614873 333 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 DUXAP9-208ENST00000622815 614 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL109809.4-201ENST00000603520 2185 ntBASIC2.33□□□□□ -2.04
PDLIM3Q53GG5 AL359854.1-201ENST00000614203 1594 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.72-201ENST00000362894 103 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 SNORD114-19-201ENST00000363072 75 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 RNA5SP99-201ENST00000364020 114 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 RNU6-851P-201ENST00000384565 107 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 FGF7P8-201ENST00000402994 292 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 MIR1287-201ENST00000408492 90 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 RN7SKP192-201ENST00000411291 327 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 MTND3P8-201ENST00000412909 339 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC243964.1-201ENST00000441814 261 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC124916.1-201ENST00000444020 547 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 MTND4P18-201ENST00000447010 465 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 RPL9P9-202ENST00000466501 579 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC008526.1-201ENST00000509149 338 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC096745.1-201ENST00000509945 370 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 RNA5SP445-201ENST00000515889 115 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 RNU6-507P-201ENST00000516045 100 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 SNORA31.15-201ENST00000516771 132 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 IGKV3-31-201ENST00000523109 329 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 COPS8P3-201ENST00000526024 482 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 ELOCP31-201ENST00000540463 467 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 TRAV32-201ENST00000553993 340 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 MIR3976-201ENST00000606807 139 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 uc_338.14-201ENST00000613162 166 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 uc_338.15-201ENST00000615470 191 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC024581.2-201ENST00000619986 252 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 AC010297.1-201ENST00000623948 149 ntBASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
PDLIM3Q53GG5 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU6-845P-201ENST00000362578 103 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU6-529P-201ENST00000363383 104 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.338-201ENST00000365320 114 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 SNORD116-11-201ENST00000383882 92 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNY3P14-201ENST00000384309 102 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU6-933P-201ENST00000384424 107 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 MIR181A2-201ENST00000384863 110 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 MIR521-1-201ENST00000384902 87 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU6-325P-201ENST00000411132 105 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 147.3 ms