Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.98□□□□□ -2.25
SCN9AQ15858 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC0.98□□□□□ -2.25
SCN9AQ15858 RPL31P3-201ENST00000458430 332 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 AC112206.3-201ENST00000514578 389 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 MIR449C-201ENST00000516047 92 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 AP000763.2-201ENST00000540641 163 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 MIR4307-201ENST00000582802 84 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 PRR13P7-201ENST00000605538 430 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 uc_338.11-201ENST00000619132 160 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
SCN9AQ15858 AC103706.2-201ENST00000638080 240 ntBASIC0.98□□□□□ -2.25
SCN9AQ15858 ZNF29P-201ENST00000225587 168 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU4-1-201ENST00000363925 141 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU6-26P-201ENST00000383985 107 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU6-17P-201ENST00000384245 107 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU6-18P-201ENST00000384527 107 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU6-360P-201ENST00000390944 104 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 MIR936-201ENST00000401264 98 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL133475.1-201ENST00000404414 305 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL589872.1-201ENST00000426602 288 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 MTND5P2-201ENST00000442927 1142 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AC079448.1-201ENST00000449377 373 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN9AQ15858 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
SCN9AQ15858 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN9AQ15858 Y_RNA.687-201ENST00000516558 91 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU6-667P-201ENST00000517186 102 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 MTND2P7-201ENST00000521337 640 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AC233702.2-202ENST00000562547 291 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 MIR3118-1-201ENST00000581787 76 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL139022.2-201ENST00000606934 443 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL078604.3-201ENST00000615580 211 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.97□□□□□ -2.25
SCN9AQ15858 AL442644.1-201ENST00000454390 3105 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 SNORD3E-201ENST00000362899 217 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 SNORD114-6-201ENST00000364393 72 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU4-56P-201ENST00000364700 142 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 MIR186-201ENST00000384988 86 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 MIR30A-201ENST00000385092 71 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RNU6-1242P-201ENST00000391052 103 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 RPL30P13-201ENST00000418873 348 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL590556.1-201ENST00000423231 483 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN9AQ15858 AC084290.1-201ENST00000434995 374 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC0.97□□□□□ -2.25
SCN9AQ15858 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.97□□□□□ -2.25
SCN9AQ15858 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN9AQ15858 OR2A41P-201ENST00000473586 105 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN9AQ15858 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.97□□□□□ -2.25
SCN9AQ15858 AC022022.2-201ENST00000602989 360 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AL136363.2-201ENST00000604173 851 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AC080013.3-201ENST00000606839 578 ntBASIC0.97□□□□□ -2.25
SCN9AQ15858 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.97□□□□□ -2.25
SCN9AQ15858 RNA5SP493-201ENST00000364115 91 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 RNU4-68P-201ENST00000364314 141 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN9AQ15858 RNU6-338P-201ENST00000383888 105 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 SNORA12-201ENST00000391162 147 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 RPS3AP36-201ENST00000398190 775 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 MIR1267-201ENST00000408723 78 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN9AQ15858 AL035666.1-201ENST00000446195 348 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC091951.3-201ENST00000504093 246 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN9AQ15858 TPT1P8-201ENST00000510120 555 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 RNU5A-4P-201ENST00000516588 111 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 SNORA31.17-201ENST00000516953 127 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN9AQ15858 AC091489.2-201ENST00000566263 604 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC024940.5-201ENST00000622889 474 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN9AQ15858 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN9AQ15858 RNU6-843P-201ENST00000384454 104 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN9AQ15858 RPL22P17-201ENST00000438729 315 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN9AQ15858 AL022238.1-201ENST00000442557 355 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC005908.1-201ENST00000468701 347 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN9AQ15858 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.96□□□□□ -2.26
SCN9AQ15858 MTATP6P15-201ENST00000527233 835 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AC130454.1-201ENST00000622948 401 ntBASIC0.96□□□□□ -2.26
SCN9AQ15858 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.95□□□□□ -2.26
SCN9AQ15858 SNORD114-2-201ENST00000363953 78 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 EBAG9P1-201ENST00000418955 543 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.95□□□□□ -2.26
SCN9AQ15858 MTND4P20-201ENST00000424125 869 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 CBX3P6-201ENST00000430257 527 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 HSPE1P21-201ENST00000438283 308 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 CR769776.1-201ENST00000441254 787 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 MTND1P12-201ENST00000455231 147 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 AL583843.1-201ENST00000456070 346 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 AP000797.1-201ENST00000478870 387 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC0.95□□□□□ -2.26
SCN9AQ15858 DEFB131E-202ENST00000602581 683 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 AC018714.1-201ENST00000605028 208 ntBASIC0.95□□□□□ -2.26
SCN9AQ15858 SNORA25.8-201ENST00000364831 128 ntBASIC0.94□□□□□ -2.26
SCN9AQ15858 Y_RNA.332-201ENST00000365271 113 ntBASIC0.94□□□□□ -2.26
SCN9AQ15858 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms