Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MIR1267-201ENST00000408723 78 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 TMSB4XP6-201ENST00000415187 135 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RPS26P5-201ENST00000418544 335 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MTCO3P1-205ENST00000422088 832 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 TMSB4XP1-201ENST00000424567 135 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.08□□□□□ -2.4
COL7A1Q02388 MTND2P21-201ENST00000436242 1042 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MTATP6P30-201ENST00000443540 664 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 EEF1E1P1-201ENST00000446998 430 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 snoU13.8-201ENST00000458890 104 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNA5SP269-201ENST00000459032 137 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC010409.1-201ENST00000487382 476 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AC145146.1-201ENST00000496370 254 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MTCO3P9-201ENST00000506989 781 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC025465.3-201ENST00000510570 311 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 SCARNA8-201ENST00000515924 131 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC079598.5-201ENST00000547460 117 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AC233702.2-202ENST00000562547 291 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MIR4782-201ENST00000577987 79 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MIR3681-201ENST00000580089 72 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL353997.4-201ENST00000586196 166 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL513534.2-201ENST00000603836 250 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL161798.1-201ENST00000604630 131 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC026741.1-201ENST00000605892 482 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL118556.2-201ENST00000614375 824 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.08□□□□□ -2.4
COL7A1Q02388 SNORD114-5-201ENST00000362928 70 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNA5SP493-201ENST00000364115 91 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU6-1019P-201ENST00000364424 107 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU6-512P-201ENST00000364438 103 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 SNORA25B-201ENST00000365507 128 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 SUGT1P1-201ENST00000379514 476 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU6-348P-201ENST00000384386 107 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL109755.1-201ENST00000401791 649 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNA5SP222-201ENST00000411039 105 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL590623.1-201ENST00000427864 105 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MTCYBP32-201ENST00000427945 1084 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC093422.3-201ENST00000428506 305 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.08□□□□□ -2.4
COL7A1Q02388 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 MED28P2-201ENST00000475771 317 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 ACA64.5-201ENST00000516207 127 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU6-416P-201ENST00000516265 103 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 Y_RNA.711-201ENST00000516993 102 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 SNORA31.22-201ENST00000517204 135 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC109329.1-201ENST00000518744 317 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
COL7A1Q02388 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.08□□□□□ -2.4
COL7A1Q02388 MIR5695-201ENST00000579717 85 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 MIR5093-201ENST00000583199 100 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 ZNF92P2-201ENST00000600543 1059 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AP000860.1-201ENST00000605250 559 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC098614.4-201ENST00000607601 462 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.08□□□□□ -2.4
COL7A1Q02388 AL596245.1-201ENST00000618994 362 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 AC092634.7-201ENST00000621022 103 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 SGO1P1-201ENST00000603525 1447 ntBASIC0.08□□□□□ -2.4
COL7A1Q02388 RNU6-369P-201ENST00000362515 102 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU5E-7P-201ENST00000365290 117 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 SNORD51.1-201ENST00000365405 77 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-338P-201ENST00000383888 105 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-114P-201ENST00000384704 105 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR587-201ENST00000384845 96 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR10A-201ENST00000385043 110 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 SNORD65.1-201ENST00000390889 71 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR942-201ENST00000401111 86 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL359634.1-202ENST00000404721 284 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AL355796.1-201ENST00000406706 323 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 MIR1295A-201ENST00000408463 79 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC068533.2-201ENST00000411872 306 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 TPMTP2-201ENST00000414372 726 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC0.07□□□□□ -2.4
COL7A1Q02388 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC092573.2-201ENST00000434546 243 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC104332.1-201ENST00000440471 797 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AL162395.1-201ENST00000457882 422 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC026410.2-201ENST00000460281 156 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 HMGN2P26-201ENST00000463169 339 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC021146.9-201ENST00000512503 156 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-678P-201ENST00000516832 109 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-528P-201ENST00000516926 100 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 RNU6-667P-201ENST00000517186 102 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AC009902.1-201ENST00000519351 183 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 ARL2BPP5-201ENST00000523141 481 ntBASIC0.07□□□□□ -2.4
COL7A1Q02388 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC0.07□□□□□ -2.4
COL7A1Q02388 AL132657.2-201ENST00000564417 358 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms