Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.6□□□□□ -2.15
RFX3P48380 HMGN2P23-201ENST00000456759 269 ntBASIC1.6□□□□□ -2.15
RFX3P48380 AL162395.1-201ENST00000457882 422 ntBASIC1.6□□□□□ -2.15
RFX3P48380 RNA5SP57-201ENST00000459463 123 ntBASIC1.6□□□□□ -2.15
RFX3P48380 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.6□□□□□ -2.15
RFX3P48380 MTND2P33-201ENST00000506452 1031 ntBASIC1.6□□□□□ -2.15
RFX3P48380 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.6□□□□□ -2.15
RFX3P48380 AP002963.1-201ENST00000530590 184 ntBASIC1.6□□□□□ -2.15
RFX3P48380 MIR4703-201ENST00000577728 79 ntBASIC1.6□□□□□ -2.15
RFX3P48380 MIR3941-201ENST00000582572 103 ntBASIC1.6□□□□□ -2.15
RFX3P48380 MIR4713-201ENST00000582691 75 ntBASIC1.6□□□□□ -2.15
RFX3P48380 Z84480.1-201ENST00000605131 311 ntBASIC1.6□□□□□ -2.15
RFX3P48380 AC120349.3-201ENST00000624377 529 ntBASIC1.6□□□□□ -2.15
RFX3P48380 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.6□□□□□ -2.15
RFX3P48380 MTND4P23-201ENST00000447723 1363 ntBASIC1.59□□□□□ -2.15
RFX3P48380 AL390237.1-201ENST00000404226 1415 ntBASIC1.59□□□□□ -2.15
RFX3P48380 RNU1-58P-201ENST00000362413 163 ntBASIC1.59□□□□□ -2.15
RFX3P48380 RNU6-181P-201ENST00000363225 107 ntBASIC1.59□□□□□ -2.15
RFX3P48380 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.59□□□□□ -2.15
RFX3P48380 RNU6-434P-201ENST00000384376 107 ntBASIC1.59□□□□□ -2.15
RFX3P48380 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
RFX3P48380 BTF3L4P2-201ENST00000392798 346 ntBASIC1.59□□□□□ -2.15
RFX3P48380 Y_RNA.597-201ENST00000410463 100 ntBASIC1.59□□□□□ -2.15
RFX3P48380 RNU6-1245P-201ENST00000411130 106 ntBASIC1.59□□□□□ -2.15
RFX3P48380 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.59□□□□□ -2.15
RFX3P48380 UBE2V1P4-201ENST00000425374 344 ntBASIC1.59□□□□□ -2.15
RFX3P48380 CBX3P6-201ENST00000430257 527 ntBASIC1.59□□□□□ -2.15
RFX3P48380 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.59□□□□□ -2.15
RFX3P48380 MTND1P18-201ENST00000448191 573 ntBASIC1.59□□□□□ -2.15
RFX3P48380 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.59□□□□□ -2.15
RFX3P48380 MTCO2P6-201ENST00000463134 685 ntBASIC1.59□□□□□ -2.15
RFX3P48380 AC009646.1-201ENST00000510455 318 ntBASIC1.59□□□□□ -2.15
RFX3P48380 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.59□□□□□ -2.15
RFX3P48380 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.59□□□□□ -2.15
RFX3P48380 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.59□□□□□ -2.15
RFX3P48380 RNA5SP458-201ENST00000516188 119 ntBASIC1.59□□□□□ -2.15
RFX3P48380 RNU6-445P-201ENST00000516949 107 ntBASIC1.59□□□□□ -2.15
RFX3P48380 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.59□□□□□ -2.15
RFX3P48380 AL356057.1-201ENST00000533798 831 ntBASIC1.59□□□□□ -2.15
RFX3P48380 MIR3913-1-201ENST00000577744 102 ntBASIC1.59□□□□□ -2.15
RFX3P48380 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.59□□□□□ -2.15
RFX3P48380 AC099842.1-201ENST00000619919 596 ntBASIC1.59□□□□□ -2.15
RFX3P48380 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
RFX3P48380 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.59□□□□□ -2.16
RFX3P48380 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
RFX3P48380 RNU6-105P-201ENST00000363909 104 ntBASIC1.58□□□□□ -2.16
RFX3P48380 RNU6-282P-201ENST00000365357 103 ntBASIC1.58□□□□□ -2.16
RFX3P48380 RNU6-393P-201ENST00000384475 107 ntBASIC1.58□□□□□ -2.16
RFX3P48380 RNU2-29P-201ENST00000410423 189 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AL590556.1-201ENST00000423231 483 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
RFX3P48380 RPS15AP10-201ENST00000432472 382 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.58□□□□□ -2.16
RFX3P48380 MTND2P4-201ENST00000445034 1004 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AC132479.1-201ENST00000449160 144 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AL122001.1-201ENST00000457027 370 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.58□□□□□ -2.16
RFX3P48380 RPS29P15-201ENST00000458329 171 ntBASIC1.58□□□□□ -2.16
RFX3P48380 Y_RNA.638-201ENST00000459374 113 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AC093259.1-201ENST00000509755 300 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AC105417.1-201ENST00000514691 285 ntBASIC1.58□□□□□ -2.16
RFX3P48380 RNU6-377P-201ENST00000515965 102 ntBASIC1.58□□□□□ -2.16
RFX3P48380 SNORA25.15-201ENST00000516487 89 ntBASIC1.58□□□□□ -2.16
RFX3P48380 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.58□□□□□ -2.16
RFX3P48380 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.58□□□□□ -2.16
RFX3P48380 AP001893.2-201ENST00000526949 202 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AC023050.3-201ENST00000541142 333 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.58□□□□□ -2.16
RFX3P48380 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.58□□□□□ -2.16
RFX3P48380 AC104581.2-201ENST00000572227 430 ntBASIC1.58□□□□□ -2.16
RFX3P48380 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.58□□□□□ -2.16
RFX3P48380 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.58□□□□□ -2.16
RFX3P48380 VN1R107P-201ENST00000601784 209 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AC121247.2-201ENST00000604776 136 ntBASIC1.58□□□□□ -2.16
RFX3P48380 AC022418.1-201ENST00000624118 445 ntBASIC1.58□□□□□ -2.16
RFX3P48380 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
RFX3P48380 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.57□□□□□ -2.16
RFX3P48380 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
RFX3P48380 RNU6-1120P-201ENST00000362988 108 ntBASIC1.57□□□□□ -2.16
RFX3P48380 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.57□□□□□ -2.16
RFX3P48380 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.57□□□□□ -2.16
RFX3P48380 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.57□□□□□ -2.16
RFX3P48380 AC079382.1-201ENST00000493346 557 ntBASIC1.57□□□□□ -2.16
RFX3P48380 AC022447.4-201ENST00000504053 364 ntBASIC1.57□□□□□ -2.16
RFX3P48380 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.57□□□□□ -2.16
RFX3P48380 MTCO3P7-201ENST00000510008 774 ntBASIC1.57□□□□□ -2.16
RFX3P48380 RN7SKP219-201ENST00000516825 296 ntBASIC1.57□□□□□ -2.16
RFX3P48380 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
RFX3P48380 MTCO2P4-201ENST00000517968 247 ntBASIC1.57□□□□□ -2.16
RFX3P48380 HSBP1P1-201ENST00000555205 166 ntBASIC1.57□□□□□ -2.16
RFX3P48380 MTCO3P23-201ENST00000561363 289 ntBASIC1.57□□□□□ -2.16
RFX3P48380 BNIP3P16-201ENST00000589779 534 ntBASIC1.57□□□□□ -2.16
RFX3P48380 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.57□□□□□ -2.16
RFX3P48380 AL590229.1-201ENST00000603497 542 ntBASIC1.57□□□□□ -2.16
RFX3P48380 AL022345.1-201ENST00000607292 135 ntBASIC1.57□□□□□ -2.16
RFX3P48380 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.57□□□□□ -2.16
RFX3P48380 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.56□□□□□ -2.16
RFX3P48380 RNU6-1285P-201ENST00000363480 105 ntBASIC1.56□□□□□ -2.16
RFX3P48380 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
RFX3P48380 MIR544A-201ENST00000384855 91 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms