Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR1273D-201ENST00000577266 86 ntBASIC1.9□□□□□ -2.11
SDC1P18827 MIR5089-201ENST00000580047 84 ntBASIC1.9□□□□□ -2.11
SDC1P18827 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SDC1P18827 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
SDC1P18827 Y_RNA.111-201ENST00000363248 100 ntBASIC1.89□□□□□ -2.11
SDC1P18827 Y_RNA.167-201ENST00000363735 109 ntBASIC1.89□□□□□ -2.11
SDC1P18827 RNU6-944P-201ENST00000364023 107 ntBASIC1.89□□□□□ -2.11
SDC1P18827 SNORA25B-201ENST00000365507 128 ntBASIC1.89□□□□□ -2.11
SDC1P18827 RNU6-908P-201ENST00000410160 94 ntBASIC1.89□□□□□ -2.11
SDC1P18827 RNU6-1245P-201ENST00000411130 106 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.89□□□□□ -2.11
SDC1P18827 SRIP2-201ENST00000428470 166 ntBASIC1.89□□□□□ -2.11
SDC1P18827 SNAP23P1-201ENST00000433229 246 ntBASIC1.89□□□□□ -2.11
SDC1P18827 RNU7-138P-201ENST00000459479 64 ntBASIC1.89□□□□□ -2.11
SDC1P18827 RPL21P99-201ENST00000480369 423 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AK3P2-201ENST00000507976 429 ntBASIC1.89□□□□□ -2.11
SDC1P18827 RNU6-1281P-201ENST00000516223 105 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AC027807.1-201ENST00000559921 996 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.89□□□□□ -2.11
SDC1P18827 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.89□□□□□ -2.11
SDC1P18827 VN1R107P-201ENST00000601784 209 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AC064807.4-201ENST00000607201 407 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AC092807.2-201ENST00000609367 243 ntBASIC1.89□□□□□ -2.11
SDC1P18827 AC098657.3-201ENST00000620434 263 ntBASIC1.89□□□□□ -2.11
SDC1P18827 YWHAEP7-203ENST00000622054 312 ntBASIC1.89□□□□□ -2.11
SDC1P18827 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SDC1P18827 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.89□□□□□ -2.11
SDC1P18827 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.88□□□□□ -2.11
SDC1P18827 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SDC1P18827 AL359851.1-201ENST00000569460 4997 ntBASIC1.88□□□□□ -2.11
SDC1P18827 RNU6-43P-201ENST00000384302 107 ntBASIC1.88□□□□□ -2.11
SDC1P18827 MIR561-201ENST00000385216 97 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AL355497.1-201ENST00000406262 551 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.88□□□□□ -2.11
SDC1P18827 AL135786.1-201ENST00000415892 214 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.88□□□□□ -2.11
SDC1P18827 SEPT14P3-201ENST00000439401 183 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.88□□□□□ -2.11
SDC1P18827 AC096638.1-201ENST00000444678 216 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AL732372.2-207ENST00000445840 183 ntBASIC1.88□□□□□ -2.11
SDC1P18827 SEPT14P2-201ENST00000453405 183 ntBASIC1.88□□□□□ -2.11
SDC1P18827 RNU6-1208P-201ENST00000459588 107 ntBASIC1.88□□□□□ -2.11
SDC1P18827 SNRPGP7-201ENST00000469016 106 ntBASIC1.88□□□□□ -2.11
SDC1P18827 Y_RNA.654-201ENST00000497848 106 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.88□□□□□ -2.11
SDC1P18827 SEPT14P4-201ENST00000513445 186 ntBASIC1.88□□□□□ -2.11
SDC1P18827 SNORA4.4-201ENST00000515921 135 ntBASIC1.88□□□□□ -2.11
SDC1P18827 RNU5F-2P-201ENST00000516066 82 ntBASIC1.88□□□□□ -2.11
SDC1P18827 RNU6-314P-201ENST00000516574 104 ntBASIC1.88□□□□□ -2.11
SDC1P18827 RNU6-1069P-201ENST00000516612 133 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.88□□□□□ -2.11
SDC1P18827 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.88□□□□□ -2.11
SDC1P18827 FO082796.1-201ENST00000523795 183 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.88□□□□□ -2.11
SDC1P18827 AC233702.2-202ENST00000562547 291 ntBASIC1.88□□□□□ -2.11
SDC1P18827 EIF1P4-201ENST00000572664 335 ntBASIC1.88□□□□□ -2.11
SDC1P18827 MIR3935-201ENST00000583472 104 ntBASIC1.88□□□□□ -2.11
SDC1P18827 MIR4448-201ENST00000584360 86 ntBASIC1.88□□□□□ -2.11
SDC1P18827 SNRPGP19-201ENST00000603826 189 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AL670379.2-201ENST00000604983 252 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AL121757.2-201ENST00000611223 313 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
SDC1P18827 AC022202.1-201ENST00000613515 211 ntBASIC1.88□□□□□ -2.11
SDC1P18827 MIR6852-201ENST00000621699 66 ntBASIC1.88□□□□□ -2.11
SDC1P18827 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.88□□□□□ -2.11
SDC1P18827 AC068137.3-201ENST00000639191 341 ntBASIC1.88□□□□□ -2.11
SDC1P18827 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
SDC1P18827 AC131280.1-202ENST00000624067 4211 ntBASIC1.88□□□□□ -2.11
SDC1P18827 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
SDC1P18827 AC009487.4-201ENST00000624969 3585 ntBASIC1.87□□□□□ -2.11
SDC1P18827 MIR449A-201ENST00000362113 91 ntBASIC1.87□□□□□ -2.11
SDC1P18827 Y_RNA.3-201ENST00000362331 103 ntBASIC1.87□□□□□ -2.11
SDC1P18827 Y_RNA.231-201ENST00000364358 102 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU6-522P-201ENST00000364497 107 ntBASIC1.87□□□□□ -2.11
SDC1P18827 SNORD32A-201ENST00000364805 84 ntBASIC1.87□□□□□ -2.11
SDC1P18827 SNORD23.1-201ENST00000408212 104 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU2-2P-201ENST00000410396 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU2-48P-201ENST00000410694 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 Z98742.3-201ENST00000418637 326 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.87□□□□□ -2.11
SDC1P18827 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.87□□□□□ -2.11
SDC1P18827 RPS27P21-201ENST00000486977 252 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AC091885.1-201ENST00000506658 268 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AC008413.1-201ENST00000511864 177 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU6-720P-201ENST00000516363 108 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU7-193P-201ENST00000516723 65 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RN7SKP256-201ENST00000517201 314 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AC034114.1-201ENST00000520293 285 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AP005597.4-201ENST00000526762 229 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AC118273.2-201ENST00000532092 465 ntBASIC1.87□□□□□ -2.11
SDC1P18827 AL162413.1-201ENST00000603198 110 ntBASIC1.87□□□□□ -2.11
SDC1P18827 ELOCP5-201ENST00000604924 333 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.15-201ENST00000611544 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.16-201ENST00000613119 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.12-201ENST00000613778 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.20-201ENST00000613956 192 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.9-201ENST00000615427 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.11-201ENST00000616345 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.2-201ENST00000616535 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.3-201ENST00000617785 191 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms