Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MIR4431-201ENST00000579990 94 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 MIR4290-201ENST00000583807 95 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC093648.1-201ENST00000623546 606 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 Y_RNA.245-201ENST00000364493 95 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC116655.1-201ENST00000508324 901 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 MTND1P22-201ENST00000510572 951 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 UTP23-205ENST00000520733 369 ntTSL 3 BASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC090888.2-201ENST00000559765 1144 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 MIR548AX-201ENST00000580117 73 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC126365.2-201ENST00000580630 379 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC097065.2-201ENST00000608159 533 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 AC013476.2-201ENST00000614456 459 ntBASIC-0.29□□□□□ -2.46
CCDC88BA6NC98 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 ELOCP14-201ENST00000428070 331 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 ELOCP7-201ENST00000439968 331 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 AC005094.1-201ENST00000440420 368 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 MTND5P2-201ENST00000442927 1142 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 snoU13.30-201ENST00000458951 104 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 AC010460.2-201ENST00000509054 677 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 RNU6-840P-201ENST00000517275 65 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 7SK.10-201ENST00000621414 298 ntBASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC-0.3□□□□□ -2.46
CCDC88BA6NC98 RNY1P8-201ENST00000383970 114 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 BTF3L4P3-201ENST00000418879 476 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC011233.1-201ENST00000422812 283 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 FAM204CP-201ENST00000424489 642 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AL008629.1-201ENST00000438615 184 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 HMGB1P30-201ENST00000492455 606 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC024589.1-201ENST00000512207 263 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 RNU6-947P-201ENST00000516264 106 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AL442163.3-201ENST00000554110 156 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC107952.2-201ENST00000606048 486 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 MIR1248-201ENST00000629190 106 ntBASIC-0.31□□□□□ -2.46
CCDC88BA6NC98 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 RPL31P54-201ENST00000429803 370 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 ZFAND6P1-201ENST00000434138 605 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 AC092685.1-201ENST00000447960 1243 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 uc_338.34-201ENST00000617467 174 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 AL603758.1-201ENST00000618654 241 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 AC092608.3-201ENST00000625017 386 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 AL159972.1-201ENST00000625150 448 ntBASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC-0.32□□□□□ -2.46
CCDC88BA6NC98 RNU6-654P-201ENST00000364373 107 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 RNU6-48P-201ENST00000384161 107 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 snoU13.25-201ENST00000458945 104 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 U7.7-201ENST00000459276 60 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 snoU13.27-201ENST00000459278 104 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 RPF2P2-201ENST00000504693 896 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 AC079140.3-201ENST00000511111 550 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 AC073410.2-201ENST00000603240 332 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 RNU6ATAC35P-201ENST00000609276 444 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 AC090517.2-201ENST00000614966 680 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 AL157786.1-207ENST00000627771 695 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 AL590396.2-201ENST00000636511 1041 ntBASIC-0.33□□□□□ -2.46
CCDC88BA6NC98 MIR938-201ENST00000401216 83 ntBASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 AC244098.3-201ENST00000424803 96 ntBASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 RNU6-91P-201ENST00000607774 107 ntBASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 AL355816.2-201ENST00000610049 647 ntBASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 AL079343.1-201ENST00000572358 1771 ntBASIC-0.34□□□□□ -2.46
CCDC88BA6NC98 RNU6-877P-201ENST00000383868 107 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 RNU6-815P-201ENST00000384080 113 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 RNU6-878P-201ENST00000384578 110 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 RNA5SP451-201ENST00000410588 110 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 COX6CP10-201ENST00000416832 224 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 MTND1P20-201ENST00000430341 950 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AL162395.1-201ENST00000457882 422 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 RNU7-90P-201ENST00000459216 62 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 HMGB1P29-201ENST00000505659 499 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 RN7SKP256-201ENST00000517201 314 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 BNIP3P6-201ENST00000549284 499 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AL513534.2-201ENST00000603836 250 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AC117490.2-201ENST00000610042 594 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AL353149.1-201ENST00000610667 244 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AC021506.2-201ENST00000612354 169 ntBASIC-0.35□□□□□ -2.46
CCDC88BA6NC98 AL031667.3-201ENST00000620124 655 ntBASIC-0.35□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms