Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 SNORD116.3-201ENST00000517176 78 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 RN7SKP295-201ENST00000517264 153 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 AC096772.1-201ENST00000609146 564 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 uc_338.14-201ENST00000613162 166 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 MIR622-201ENST00000638396 96 ntBASIC3.22□□□□□ -1.89
PCDHA3Q9Y5H8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 RNA5SP139-201ENST00000364340 117 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 Y_RNA.333-201ENST00000365274 102 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 Y_RNA.496-201ENST00000384444 101 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 MIR181B1-201ENST00000385240 110 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 MIR147B-201ENST00000390185 80 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 RNU1-101P-201ENST00000391171 127 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AL138885.1-201ENST00000405921 675 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 MCFD2P1-201ENST00000417812 300 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC009414.1-201ENST00000427200 443 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AL353997.1-201ENST00000432936 108 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 RPS29P6-201ENST00000438196 145 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 MTND4P19-201ENST00000446659 478 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 RPL39P29-201ENST00000447779 157 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 RN7SKP210-201ENST00000459176 261 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC012493.2-201ENST00000595083 291 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC007179.3-201ENST00000604976 235 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC007792.1-201ENST00000623023 402 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC018692.3-201ENST00000623929 123 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AC110079.1-202ENST00000635213 138 ntBASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA3Q9Y5H8 AL353743.1-202ENST00000431724 1695 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC002543.1-201ENST00000299783 1954 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC073325.2-201ENST00000339545 159 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-1285P-201ENST00000363480 105 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 Y_RNA.162-201ENST00000363683 102 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-99P-201ENST00000364721 107 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC117470.1-201ENST00000381974 330 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-1286P-201ENST00000383871 107 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-142P-201ENST00000384019 107 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-1032P-201ENST00000384100 107 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 SAR1AP2-201ENST00000392696 594 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 MTCYBP2-201ENST00000407745 171 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 MTCYBP10-201ENST00000424905 650 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC244505.4-201ENST00000434905 287 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 SSXP5-201ENST00000443473 287 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC109925.1-201ENST00000478069 331 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RN7SL633P-201ENST00000488974 297 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC104564.1-201ENST00000493028 407 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 SNORA25.10-201ENST00000515926 124 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 Y_RNA.661-201ENST00000516003 99 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC109329.1-201ENST00000518744 317 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC006504.6-201ENST00000590142 199 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 RPS15AP11-201ENST00000594193 385 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AL133393.1-201ENST00000603277 287 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AL355877.2-201ENST00000603670 358 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC016925.2-201ENST00000605108 242 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC096577.2-201ENST00000611455 153 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 PART1_1.1-201ENST00000611761 217 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC083806.3-201ENST00000614016 455 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 FAM35CP-201ENST00000554755 2470 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AL035425.3-201ENST00000564206 4996 ntBASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA3Q9Y5H8 AC233981.2-201ENST00000611524 1614 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-1010P-201ENST00000362757 107 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 RNY1P14-201ENST00000384426 108 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-700P-201ENST00000391043 107 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 RNU6-1156P-201ENST00000410365 100 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 RNU2-23P-201ENST00000410545 195 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 RNU4-47P-201ENST00000410876 114 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 CYCSP48-201ENST00000417124 323 ntBASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHA3Q9Y5H8 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms