Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-192P-201ENST00000391253 100 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 RNA5SP390-201ENST00000410191 113 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AL135786.1-201ENST00000415892 214 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC008267.5-201ENST00000424928 265 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 ERLEC1P1-201ENST00000433806 578 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 RPL7P12-201ENST00000446719 750 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AL031274.1-201ENST00000450334 232 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC090515.1-201ENST00000465295 476 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC011352.1-201ENST00000512300 793 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 RNU6-377P-201ENST00000515965 102 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 RNU6-1069P-201ENST00000516612 133 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC109479.2-201ENST00000517842 174 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 COPS8P3-201ENST00000526024 482 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 MTND1P35-201ENST00000526739 508 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 BNIP3P25-201ENST00000596023 559 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AL121757.2-201ENST00000611223 313 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC009233.1-201ENST00000616477 371 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 AC009831.4-201ENST00000620744 325 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 OR56A5-201ENST00000340110 738 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU6-527P-201ENST00000363425 104 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 SNORA3A-201ENST00000364113 130 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU1-91P-201ENST00000364746 163 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNA5SP240-201ENST00000365355 128 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU1-57P-201ENST00000384491 166 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 MIR186-201ENST00000384988 86 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 SNORD73A-201ENST00000386062 65 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 SNORD115-47-201ENST00000391226 86 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 SNORA11.2-201ENST00000408318 127 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNA5SP425-201ENST00000410336 112 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RN7SKP223-201ENST00000410582 62 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU2-63P-201ENST00000410792 194 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 USP9YP18-201ENST00000425912 695 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AL591043.1-201ENST00000432461 424 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 MTND1P4-201ENST00000435196 415 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU7-138P-201ENST00000459479 64 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RN7SL429P-201ENST00000479090 223 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RN7SL489P-201ENST00000486185 223 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RN7SL327P-201ENST00000488659 223 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC140059.1-201ENST00000489238 361 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU1-41P-201ENST00000516161 162 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RNU1-48P-201ENST00000516400 162 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC103996.1-201ENST00000555468 102 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC073410.2-201ENST00000603240 332 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC013412.1-201ENST00000610687 192 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RN7SL853P-201ENST00000617250 223 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 MIR5739-201ENST00000619803 80 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 AC024614.3-201ENST00000637860 256 ntBASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
CPSF3Q9UKF6 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.4□□□□□ -2.02
CPSF3Q9UKF6 RNU6-827P-201ENST00000365553 106 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.505-201ENST00000384489 102 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 RNU2-23P-201ENST00000410545 195 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 SRIP2-201ENST00000428470 166 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 UBE2V1P8-201ENST00000437166 265 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 RPL32P28-201ENST00000443577 397 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 HMGN2P26-201ENST00000463169 339 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 RPL30P12-201ENST00000474666 353 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AC107222.1-201ENST00000510899 637 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.665-201ENST00000516177 98 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 RNA5SP200-201ENST00000516360 103 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 MTND1P5-201ENST00000517906 940 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AC109329.1-201ENST00000518744 317 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 IGLV3-17-201ENST00000519099 244 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AP000889.2-201ENST00000532684 490 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 MIR1273D-201ENST00000577266 86 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 MIR3945-201ENST00000581853 98 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 MIR5692C1-201ENST00000585309 91 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AL713866.2-201ENST00000603579 219 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AC080078.2-201ENST00000603766 501 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AL138963.2-201ENST00000605137 226 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 AL137847.3-201ENST00000611521 109 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 MIR3688-2-201ENST00000636963 87 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.4□□□□□ -2.03
CPSF3Q9UKF6 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 AC121333.1-201ENST00000567488 2709 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.89-201ENST00000363031 102 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 RNU6-534P-201ENST00000364877 106 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 RNU1-148P-201ENST00000384472 162 ntBASIC2.39□□□□□ -2.03
CPSF3Q9UKF6 RPS29P13-201ENST00000402041 169 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 216.4 ms