Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 uc_338.25-201ENST00000613756 156 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MIR1244-3-201ENST00000635744 85 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MIR1244-2-201ENST00000636449 85 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MIR1244-4-202ENST00000636813 85 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MIR622-201ENST00000638396 96 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MAPK10-322ENST00000641485 4530 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 PWAR6-201ENST00000552334 4618 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 Y_RNA.158-201ENST00000363651 101 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 RNU6-748P-201ENST00000384648 107 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 MIR184-201ENST00000384962 84 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 RNU6-700P-201ENST00000391043 107 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 RNU2-23P-201ENST00000410545 195 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 RNA5SP494-201ENST00000410653 129 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 RPL23AP95-201ENST00000426806 265 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AL513124.1-201ENST00000450410 614 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC107626.1-201ENST00000471084 183 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 RPL30P10-201ENST00000488148 337 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 MRPS36P4-201ENST00000534436 298 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC090897.2-201ENST00000581715 130 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC008737.2-201ENST00000599446 118 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AL356157.2-201ENST00000605122 111 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC006386.2-201ENST00000624491 75 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AC012005.1-201ENST00000624575 75 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
TDP1Q9NUW8 AL365361.1-201ENST00000566942 3481 ntBASIC3.28□□□□□ -1.88
TDP1Q9NUW8 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
TDP1Q9NUW8 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SNORA44-201ENST00000384584 132 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SNORD15B-201ENST00000384714 146 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 MTCYBP10-201ENST00000424905 650 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC092423.1-201ENST00000430165 186 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC004383.1-201ENST00000438135 289 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC021205.2-201ENST00000480069 347 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SNORD59.2-201ENST00000516873 68 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 MIR2276-201ENST00000516886 89 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AL590705.4-201ENST00000532209 134 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC010653.1-201ENST00000571108 881 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SNORD58B-201ENST00000607313 66 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 SNORA50A-202ENST00000629536 136 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AL606534.2-204ENST00000635008 178 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
TDP1Q9NUW8 AC008669.1-201ENST00000565823 2178 ntBASIC3.27□□□□□ -1.89
TDP1Q9NUW8 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AC233981.2-201ENST00000611524 1614 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AC058791.1-201ENST00000608412 3198 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.39-201ENST00000362620 98 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.80-201ENST00000362996 102 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RNY3P11-201ENST00000364153 102 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RNU6-968P-201ENST00000384076 107 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.485-201ENST00000384395 102 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 EI24P2-201ENST00000397776 1076 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AL133475.1-201ENST00000404414 305 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RNA5SP390-201ENST00000410191 113 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 EIF1AXP1-201ENST00000419267 435 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 MTCO3P29-201ENST00000432119 779 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 CHEK2P4-201ENST00000450340 246 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RN7SKP210-201ENST00000459176 261 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 SNRPGP7-201ENST00000469016 106 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RPL30P12-201ENST00000474666 353 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RPS26P21-201ENST00000475397 348 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RNU5B-3P-201ENST00000516601 115 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 RNU7-4P-201ENST00000516961 62 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 GNAI2P1-201ENST00000541815 315 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 MIR4425-201ENST00000580572 84 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AL391813.1-201ENST00000603098 260 ntBASIC3.26□□□□□ -1.89
TDP1Q9NUW8 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.26□□□□□ -1.89
TDP1Q9NUW8 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 200.9 ms