Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FAM206BP-201ENST00000510179 541 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 RNU6-123P-201ENST00000516163 102 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 Y_RNA.687-201ENST00000516558 91 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC022616.8-201ENST00000533569 253 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AP000763.2-201ENST00000540641 163 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC136443.5-201ENST00000603741 370 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC027807.2-201ENST00000616099 408 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 OR4G2P-201ENST00000328113 903 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 SNORD114-27-201ENST00000363766 70 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RNU6-1164P-201ENST00000364428 107 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 SNORD114-22-201ENST00000365423 72 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RNU6-546P-201ENST00000383991 107 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RNY1P14-201ENST00000384426 108 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RPL23AP32-201ENST00000395315 459 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RNU2-32P-201ENST00000411193 191 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 MTND4P20-201ENST00000424125 869 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AL593851.1-201ENST00000426171 157 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.18□□□□□ -2.22
LMX1AQ8TE12 EPS15P1-201ENST00000448836 336 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AL353752.1-201ENST00000454946 260 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RNU1-98P-201ENST00000458992 160 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 RNA5SP57-201ENST00000459463 123 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AC117522.1-201ENST00000509821 380 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AC022616.3-201ENST00000523940 148 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.18□□□□□ -2.22
LMX1AQ8TE12 DEFB131E-202ENST00000602581 683 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AC010900.2-201ENST00000604508 210 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.18□□□□□ -2.22
LMX1AQ8TE12 AC024933.1-201ENST00000608472 348 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.18□□□□□ -2.22
LMX1AQ8TE12 MIR6734-201ENST00000621166 68 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
LMX1AQ8TE12 OR4G1P-203ENST00000641984 1631 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 ZNF680P1-201ENST00000436625 1469 ntBASIC1.18□□□□□ -2.22
LMX1AQ8TE12 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RNU6-944P-201ENST00000364023 107 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RNU6-169P-201ENST00000365336 107 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RNU5E-5P-201ENST00000365379 116 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RNU6-338P-201ENST00000383888 105 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 SNORD14D-201ENST00000384390 87 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RNU6-1179P-201ENST00000384667 107 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 MIR30A-201ENST00000385092 71 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RNU2-3P-201ENST00000410144 191 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 SRIP3-201ENST00000413200 219 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 MTCO3P46-201ENST00000425787 232 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 CALM2P2-201ENST00000428512 440 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC119618.1-201ENST00000434191 222 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC007969.2-201ENST00000441891 191 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 PRELID3BP1-201ENST00000457142 540 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RAP1BP2-201ENST00000478270 544 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RPL30P1-201ENST00000488676 339 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 RBBP4P6-201ENST00000508098 202 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AP003392.2-201ENST00000527269 208 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AC112191.3-201ENST00000604371 277 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 Z82243.1-201ENST00000609432 473 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 AL157786.1-207ENST00000627771 695 ntBASIC1.17□□□□□ -2.22
LMX1AQ8TE12 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.17□□□□□ -2.22
LMX1AQ8TE12 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
LMX1AQ8TE12 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LMX1AQ8TE12 MIR96-201ENST00000362288 78 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 MIR489-201ENST00000384923 84 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 RPS3AP36-201ENST00000398190 775 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 MRPL42P2-201ENST00000403169 426 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 RNU6-607P-201ENST00000411283 108 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 Z99497.1-201ENST00000421282 135 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AL356583.2-201ENST00000426536 280 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AC006026.2-201ENST00000457376 180 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.16□□□□□ -2.22
LMX1AQ8TE12 TPT1P8-201ENST00000510120 555 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 PTP4A1P4-201ENST00000512479 322 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 Y_RNA.672-201ENST00000516289 104 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AP005597.4-201ENST00000526762 229 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AP003072.2-201ENST00000527756 676 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 RPL21P5-201ENST00000554662 472 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AC068338.1-201ENST00000565567 176 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AL136363.2-201ENST00000604173 851 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AL158032.1-201ENST00000605401 106 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 MIR7974-201ENST00000615835 79 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AC022960.3-201ENST00000619794 441 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 AC131159.1-201ENST00000621854 213 ntBASIC1.16□□□□□ -2.22
LMX1AQ8TE12 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.15□□□□□ -2.22
LMX1AQ8TE12 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
LMX1AQ8TE12 RNU1-58P-201ENST00000362413 163 ntBASIC1.15□□□□□ -2.23
LMX1AQ8TE12 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms