Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-653P-201ENST00000363074 106 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.398-201ENST00000383952 99 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-211P-201ENST00000384047 107 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AL357139.1-201ENST00000407792 426 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 U3.39-201ENST00000408569 239 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AC019205.3-201ENST00000424573 156 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AL591419.1-201ENST00000427423 339 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AC006199.1-201ENST00000548728 219 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 SNRPGP20-201ENST00000604477 205 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AL110115.1-201ENST00000614396 364 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AL365265.1-201ENST00000621045 234 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 MIR6810-201ENST00000622701 70 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 AL672296.1-201ENST00000427780 2158 ntBASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-1272P-201ENST00000362776 107 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.121-201ENST00000363309 113 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 SNORD50B-201ENST00000364995 70 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RNU1-64P-201ENST00000365443 163 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RPS26P8-201ENST00000393490 348 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AL512633.1-201ENST00000399931 655 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RNU2-54P-201ENST00000410299 190 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AC099548.1-201ENST00000421443 426 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AC024067.1-201ENST00000426199 223 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RPL30P12-201ENST00000474666 353 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RN7SL271P-201ENST00000487601 295 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-581P-201ENST00000516214 105 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-346P-201ENST00000516288 111 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 SNORD19.2-201ENST00000516978 73 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-91P-201ENST00000607774 107 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AC104465.1-201ENST00000611365 139 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 AC073308.1-201ENST00000623696 305 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 MIR3199-2-201ENST00000636243 86 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 RBBP8P1-201ENST00000449447 1844 ntBASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.81□□□□□ -1.8
UBE3DQ7Z6J8 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 RNU4-80P-201ENST00000363200 141 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP399-201ENST00000364003 117 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-312P-201ENST00000364629 107 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 RNU6-1117P-201ENST00000384525 104 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.571-201ENST00000384753 98 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 CRYBB2P1-203ENST00000415709 538 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 IFNA11P-201ENST00000446352 526 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 TPT1P12-201ENST00000448968 492 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 RN7SL860P-201ENST00000473738 223 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 AC055872.1-201ENST00000570978 278 ntBASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
UBE3DQ7Z6J8 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AC004944.1-201ENST00000517807 3059 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.23-201ENST00000362496 106 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 SNORA70.2-201ENST00000364506 135 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.272-201ENST00000364696 102 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 RNU1-13P-201ENST00000384499 162 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 EI24P2-201ENST00000397776 1076 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 ELOCP21-201ENST00000412558 336 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AC091179.3-201ENST00000474761 144 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 S100A11P1-201ENST00000477525 312 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AC090525.1-201ENST00000479116 478 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 RNY3P16-201ENST00000516338 101 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 YPEL5P3-201ENST00000547227 352 ntBASIC3.79□□□□□ -1.8
UBE3DQ7Z6J8 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms