Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNA5SP341-201ENST00000516261 117 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MIR5701-3-201ENST00000578890 82 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MIR4325-201ENST00000583049 90 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MIR5701-1-201ENST00000585138 82 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AC083806.3-201ENST00000614016 455 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MIR5701-2-201ENST00000615634 82 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AC097372.5-201ENST00000623665 376 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 MAPK10-362ENST00000641864 4484 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.216-201ENST00000364205 93 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-1141P-201ENST00000364520 107 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.533-201ENST00000384596 114 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-1222P-201ENST00000384615 107 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AL138885.1-201ENST00000405921 675 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 MTCYBP2-201ENST00000407745 171 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 RNU2-49P-201ENST00000410666 184 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 MCFD2P1-201ENST00000417812 300 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC009969.1-201ENST00000438726 172 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 RN7SKP210-201ENST00000459176 261 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC107626.1-201ENST00000471084 183 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 RPS26P21-201ENST00000475397 348 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC090897.2-201ENST00000581715 130 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AL133393.1-201ENST00000603277 287 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC016925.2-201ENST00000605108 242 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AL355802.3-201ENST00000607571 545 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC107294.3-201ENST00000609211 526 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 HMGB1P24-202ENST00000615653 685 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 AC009541.1-201ENST00000438279 2662 ntBASIC3.05□□□□□ -1.92
PTCHD3Q3KNS1 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.48-201ENST00000362710 103 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.123-201ENST00000363338 102 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-799P-201ENST00000363567 107 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-639P-201ENST00000384074 107 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-1160P-201ENST00000384546 104 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 SAR1AP2-201ENST00000392696 594 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 RPS12P18-201ENST00000442381 270 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-120P-201ENST00000516077 103 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AC010653.1-201ENST00000571108 881 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 AC060766.3-201ENST00000591442 263 ntBASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.04□□□□□ -1.92
PTCHD3Q3KNS1 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RBBP8P1-201ENST00000449447 1844 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC091564.4-201ENST00000533934 2194 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 MIR422A-201ENST00000362286 90 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RNY1P14-201ENST00000384426 108 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.496-201ENST00000384444 101 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-738P-201ENST00000384531 106 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 MIR606-201ENST00000384851 96 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 MIR544A-201ENST00000384855 91 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-308P-201ENST00000390957 107 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-700P-201ENST00000391043 107 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RN7SKP61-201ENST00000410642 295 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 MTCYBP10-201ENST00000424905 650 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC078809.1-201ENST00000427601 140 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RPL21P40-201ENST00000428586 483 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC092185.1-201ENST00000491371 97 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.661-201ENST00000516003 99 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-475P-201ENST00000516073 104 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 DNAJC8P1-201ENST00000554535 372 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 7SK.7-201ENST00000603504 247 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC096772.1-201ENST00000609146 564 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 AC018692.3-201ENST00000623929 123 ntBASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PTCHD3Q3KNS1 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.03□□□□□ -1.93
PTCHD3Q3KNS1 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
PTCHD3Q3KNS1 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PTCHD3Q3KNS1 AC002543.1-201ENST00000299783 1954 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms