Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC010999.1-201ENST00000611856 324 ntBASIC4.06□□□□□ -1.76
SOX4Q06945 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
SOX4Q06945 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SOX4Q06945 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SOX4Q06945 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
SOX4Q06945 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SOX4Q06945 MAPK10-253ENST00000641010 4072 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.05□□□□□ -1.76
SOX4Q06945 MAPK10-372ENST00000641954 3413 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
SOX4Q06945 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SOX4Q06945 RNU4-80P-201ENST00000363200 141 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 RNU6-778P-201ENST00000363269 103 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 RNU6-873P-201ENST00000363833 107 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 SNORA36A-201ENST00000384221 132 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 SNORA22C-201ENST00000384614 134 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 MIR200C-201ENST00000384980 68 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SOX4Q06945 AC093578.1-201ENST00000415219 368 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AL035423.1-201ENST00000420331 213 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AL358232.1-201ENST00000448030 501 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AC016632.1-201ENST00000503994 196 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC4.05□□□□□ -1.76
SOX4Q06945 RNU6-966P-201ENST00000516479 104 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX4Q06945 AC233702.2-202ENST00000562547 291 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AL133393.1-201ENST00000603277 287 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 AL034408.1-202ENST00000636088 415 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.05□□□□□ -1.76
SOX4Q06945 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
SOX4Q06945 AC110491.1-201ENST00000562191 2010 ntBASIC4.05□□□□□ -1.76
SOX4Q06945 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.05□□□□□ -1.76
SOX4Q06945 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.05□□□□□ -1.76
SOX4Q06945 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
SOX4Q06945 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX4Q06945 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
SOX4Q06945 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.04□□□□□ -1.76
SOX4Q06945 AL161912.2-201ENST00000565707 3007 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SOX4Q06945 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
SOX4Q06945 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.04□□□□□ -1.76
SOX4Q06945 RNU6-1141P-201ENST00000364520 107 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 RNU1-100P-201ENST00000365255 165 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 MIR186-201ENST00000384988 86 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 AC125238.1-201ENST00000448842 249 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX4Q06945 SNRPGP5-201ENST00000456003 220 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 snoU13.6-201ENST00000458785 104 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 RNA5SP164-201ENST00000516533 110 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.04□□□□□ -1.76
SOX4Q06945 MIR3145-201ENST00000580727 82 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 AC004825.2-201ENST00000616634 455 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 MIR6075-201ENST00000620782 95 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX4Q06945 IPO8P1-201ENST00000455509 3109 ntBASIC4.04□□□□□ -1.76
SOX4Q06945 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
SOX4Q06945 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
SOX4Q06945 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.04□□□□□ -1.76
SOX4Q06945 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.04□□□□□ -1.76
SOX4Q06945 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX4Q06945 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SOX4Q06945 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SOX4Q06945 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX4Q06945 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX4Q06945 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SOX4Q06945 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX4Q06945 Y_RNA.7-201ENST00000362352 102 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNU6-312P-201ENST00000364629 107 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNU1-73P-201ENST00000383971 164 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNU6-217P-201ENST00000384164 104 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNU6-1168P-201ENST00000390831 104 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 SNORA40.19-201ENST00000390846 128 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNU6-1197P-201ENST00000391183 107 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX4Q06945 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX4Q06945 RPL26P27-201ENST00000414397 437 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC004552.1-201ENST00000419089 348 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX4Q06945 RPS26P3-201ENST00000470205 348 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC090543.2-201ENST00000483963 348 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC004057.1-201ENST00000485827 348 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.03□□□□□ -1.76
SOX4Q06945 AC104619.4-201ENST00000510773 249 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX4Q06945 RNU5F-8P-201ENST00000515941 111 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNA5SP54-201ENST00000516951 92 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RNU6-1073P-201ENST00000517182 106 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SOX4Q06945 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.03□□□□□ -1.76
SOX4Q06945 AL137849.1-201ENST00000604767 169 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AL365222.1-201ENST00000614661 98 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 MIR6134-201ENST00000617606 109 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC092628.2-201ENST00000622492 339 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 AC009093.8-201ENST00000641769 292 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX4Q06945 SRP72P2-201ENST00000344851 1979 ntBASIC4.03□□□□□ -1.76
SOX4Q06945 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.03□□□□□ -1.76
SOX4Q06945 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SOX4Q06945 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms