Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 AC116347.2-201ENST00000514912 523 ntBASIC0.8□□□□□ -2.28
RPL28P46779 RNA5SP437-201ENST00000517249 129 ntBASIC0.8□□□□□ -2.28
RPL28P46779 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.8□□□□□ -2.28
RPL28P46779 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC0.8□□□□□ -2.28
RPL28P46779 RRN3P3-201ENST00000549207 578 ntBASIC0.8□□□□□ -2.28
RPL28P46779 MIR4303-201ENST00000581299 66 ntBASIC0.8□□□□□ -2.28
RPL28P46779 AP003465.2-201ENST00000602571 373 ntBASIC0.8□□□□□ -2.28
RPL28P46779 AC018645.2-201ENST00000609151 472 ntBASIC0.8□□□□□ -2.28
RPL28P46779 AC104073.3-201ENST00000610942 955 ntBASIC0.8□□□□□ -2.28
RPL28P46779 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.8□□□□□ -2.28
RPL28P46779 AL139418.1-201ENST00000613613 177 ntBASIC0.8□□□□□ -2.28
RPL28P46779 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.8□□□□□ -2.28
RPL28P46779 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC0.8□□□□□ -2.28
RPL28P46779 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.8□□□□□ -2.28
RPL28P46779 U4.7-201ENST00000638126 106 ntBASIC0.8□□□□□ -2.28
RPL28P46779 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC0.79□□□□□ -2.28
RPL28P46779 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.79□□□□□ -2.28
RPL28P46779 SNORA7.1-201ENST00000363750 139 ntBASIC0.79□□□□□ -2.28
RPL28P46779 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.79□□□□□ -2.28
RPL28P46779 RNU6-39P-201ENST00000384344 107 ntBASIC0.79□□□□□ -2.28
RPL28P46779 RNU6-809P-201ENST00000384461 107 ntBASIC0.79□□□□□ -2.28
RPL28P46779 MIR764-201ENST00000390811 85 ntBASIC0.79□□□□□ -2.28
RPL28P46779 RPL21P90-201ENST00000415692 466 ntBASIC0.79□□□□□ -2.28
RPL28P46779 EIF1P1-201ENST00000421436 341 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AL591704.2-201ENST00000421658 181 ntBASIC0.79□□□□□ -2.28
RPL28P46779 RPS27AP14-201ENST00000422868 454 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.79□□□□□ -2.28
RPL28P46779 MTND5P25-201ENST00000430499 799 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AL591043.1-201ENST00000432461 424 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AC245047.4-201ENST00000433189 144 ntBASIC0.79□□□□□ -2.28
RPL28P46779 RPL37P21-201ENST00000435890 276 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.79□□□□□ -2.28
RPL28P46779 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC0.79□□□□□ -2.28
RPL28P46779 MTCO2P29-201ENST00000465212 189 ntBASIC0.79□□□□□ -2.28
RPL28P46779 OR2A41P-201ENST00000473586 105 ntBASIC0.79□□□□□ -2.28
RPL28P46779 SNORD60.2-201ENST00000516883 86 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC0.79□□□□□ -2.28
RPL28P46779 AP003033.1-201ENST00000527244 415 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AP002453.2-201ENST00000533503 320 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.79□□□□□ -2.28
RPL28P46779 DNAJC19P9-201ENST00000555084 351 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC0.79□□□□□ -2.28
RPL28P46779 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC0.79□□□□□ -2.28
RPL28P46779 AC015688.6-201ENST00000577737 104 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AC008521.1-201ENST00000587471 187 ntBASIC0.79□□□□□ -2.28
RPL28P46779 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
RPL28P46779 AL157834.3-201ENST00000615543 103 ntBASIC0.79□□□□□ -2.28
RPL28P46779 AL157786.1-207ENST00000627771 695 ntBASIC0.79□□□□□ -2.28
RPL28P46779 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
RPL28P46779 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.78□□□□□ -2.28
RPL28P46779 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.78□□□□□ -2.28
RPL28P46779 MIR378A-201ENST00000362177 66 ntBASIC0.78□□□□□ -2.28
RPL28P46779 RNU4-91P-201ENST00000364778 135 ntBASIC0.78□□□□□ -2.28
RPL28P46779 SNORA25.8-201ENST00000364831 128 ntBASIC0.78□□□□□ -2.28
RPL28P46779 RNU6-142P-201ENST00000384019 107 ntBASIC0.78□□□□□ -2.28
RPL28P46779 MIR548B-201ENST00000385247 97 ntBASIC0.78□□□□□ -2.28
RPL28P46779 RNU2-3P-201ENST00000410144 191 ntBASIC0.78□□□□□ -2.28
RPL28P46779 EBAG9P1-201ENST00000418955 543 ntBASIC0.78□□□□□ -2.28
RPL28P46779 MRPL35P3-201ENST00000421557 364 ntBASIC0.78□□□□□ -2.28
RPL28P46779 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.78□□□□□ -2.28
RPL28P46779 AC137499.1-201ENST00000427602 88 ntBASIC0.78□□□□□ -2.28
RPL28P46779 CALM2P2-201ENST00000428512 440 ntBASIC0.78□□□□□ -2.28
RPL28P46779 AC099677.2-201ENST00000436385 175 ntBASIC0.78□□□□□ -2.28
RPL28P46779 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.78□□□□□ -2.28
RPL28P46779 RPS29P29-201ENST00000456396 171 ntBASIC0.78□□□□□ -2.28
RPL28P46779 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.78□□□□□ -2.28
RPL28P46779 RNA5SP269-201ENST00000459032 137 ntBASIC0.78□□□□□ -2.28
RPL28P46779 snoU109.3-201ENST00000459477 145 ntBASIC0.78□□□□□ -2.28
RPL28P46779 RBBP4P6-201ENST00000508098 202 ntBASIC0.78□□□□□ -2.28
RPL28P46779 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.78□□□□□ -2.28
RPL28P46779 ATP5EP1-201ENST00000510257 156 ntBASIC0.78□□□□□ -2.28
RPL28P46779 AC019176.1-201ENST00000518519 225 ntBASIC0.78□□□□□ -2.28
RPL28P46779 SUMO2P18-201ENST00000518873 252 ntBASIC0.78□□□□□ -2.28
RPL28P46779 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC0.78□□□□□ -2.28
RPL28P46779 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.78□□□□□ -2.28
RPL28P46779 HMGB1P33-201ENST00000563485 527 ntBASIC0.78□□□□□ -2.28
RPL28P46779 MIR5692A1-201ENST00000580523 69 ntBASIC0.78□□□□□ -2.28
RPL28P46779 MIR4298-201ENST00000584380 73 ntBASIC0.78□□□□□ -2.28
RPL28P46779 AC008752.3-201ENST00000588113 712 ntBASIC0.78□□□□□ -2.28
RPL28P46779 RNU4-5P-201ENST00000607255 135 ntBASIC0.78□□□□□ -2.28
RPL28P46779 MIR6078-201ENST00000611069 100 ntBASIC0.78□□□□□ -2.28
RPL28P46779 SNORD98-201ENST00000636377 67 ntBASIC0.78□□□□□ -2.28
RPL28P46779 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
RPL28P46779 RNA5SP327-201ENST00000362494 101 ntBASIC0.77□□□□□ -2.29
RPL28P46779 RNU6-527P-201ENST00000363425 104 ntBASIC0.77□□□□□ -2.29
RPL28P46779 Y_RNA.140-201ENST00000363474 103 ntBASIC0.77□□□□□ -2.29
RPL28P46779 RNU6-105P-201ENST00000363909 104 ntBASIC0.77□□□□□ -2.29
RPL28P46779 SNORA22-201ENST00000383907 134 ntBASIC0.77□□□□□ -2.29
RPL28P46779 RNU6-83P-201ENST00000384568 112 ntBASIC0.77□□□□□ -2.29
RPL28P46779 SNORA22C-201ENST00000384614 134 ntBASIC0.77□□□□□ -2.29
RPL28P46779 MIR558-201ENST00000384920 94 ntBASIC0.77□□□□□ -2.29
RPL28P46779 SNORA40.6-201ENST00000391153 128 ntBASIC0.77□□□□□ -2.29
RPL28P46779 RPL23AP32-201ENST00000395315 459 ntBASIC0.77□□□□□ -2.29
RPL28P46779 MRPL35P1-201ENST00000404272 572 ntBASIC0.77□□□□□ -2.29
RPL28P46779 MTCYBP2-201ENST00000407745 171 ntBASIC0.77□□□□□ -2.29
RPL28P46779 RNU6-607P-201ENST00000411283 108 ntBASIC0.77□□□□□ -2.29
RPL28P46779 MTCO3P41-201ENST00000414801 328 ntBASIC0.77□□□□□ -2.29
RPL28P46779 CST2P1-201ENST00000425770 87 ntBASIC0.77□□□□□ -2.29
RPL28P46779 AC092648.1-201ENST00000425870 423 ntBASIC0.77□□□□□ -2.29
RPL28P46779 MED13P1-201ENST00000428342 171 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms