Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.58□□□□□ -2
MSH2P43246 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH2P43246 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.58□□□□□ -2
MSH2P43246 AC100830.2-201ENST00000581636 240 ntBASIC2.58□□□□□ -2
MSH2P43246 VN1R107P-201ENST00000601784 209 ntBASIC2.58□□□□□ -2
MSH2P43246 RBM11P1-201ENST00000604951 799 ntBASIC2.58□□□□□ -2
MSH2P43246 AC064836.2-201ENST00000609491 462 ntBASIC2.58□□□□□ -2
MSH2P43246 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.58□□□□□ -2
MSH2P43246 AC009233.1-201ENST00000616477 371 ntBASIC2.58□□□□□ -2
MSH2P43246 MIR5739-201ENST00000619803 80 ntBASIC2.58□□□□□ -2
MSH2P43246 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.57□□□□□ -2
MSH2P43246 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.57□□□□□ -2
MSH2P43246 RNU6-1010P-201ENST00000362757 107 ntBASIC2.57□□□□□ -2
MSH2P43246 SNORD114-19-201ENST00000363072 75 ntBASIC2.57□□□□□ -2
MSH2P43246 SNORA5B-201ENST00000363786 132 ntBASIC2.57□□□□□ -2
MSH2P43246 SNORA80A-201ENST00000363922 136 ntBASIC2.57□□□□□ -2
MSH2P43246 RNU6-128P-201ENST00000383976 107 ntBASIC2.57□□□□□ -2
MSH2P43246 RNU6-831P-201ENST00000384548 107 ntBASIC2.57□□□□□ -2
MSH2P43246 AL445529.1-201ENST00000398713 389 ntBASIC2.57□□□□□ -2
MSH2P43246 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 MTCO3P18-201ENST00000440206 761 ntBASIC2.57□□□□□ -2
MSH2P43246 MTCO2P3-201ENST00000442543 421 ntBASIC2.57□□□□□ -2
MSH2P43246 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 AL117351.2-201ENST00000513571 157 ntBASIC2.57□□□□□ -2
MSH2P43246 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.57□□□□□ -2
MSH2P43246 RNU6-256P-201ENST00000516747 97 ntBASIC2.57□□□□□ -2
MSH2P43246 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.57□□□□□ -2
MSH2P43246 AC107953.1-201ENST00000522216 297 ntBASIC2.57□□□□□ -2
MSH2P43246 AC104576.1-201ENST00000524225 88 ntBASIC2.57□□□□□ -2
MSH2P43246 GTF3AP2-201ENST00000557014 266 ntBASIC2.57□□□□□ -2
MSH2P43246 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.57□□□□□ -2
MSH2P43246 BNIP3P16-201ENST00000589779 534 ntBASIC2.57□□□□□ -2
MSH2P43246 AL355297.2-201ENST00000604792 129 ntBASIC2.57□□□□□ -2
MSH2P43246 ELOCP5-201ENST00000604924 333 ntBASIC2.57□□□□□ -2
MSH2P43246 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.57□□□□□ -2
MSH2P43246 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
MSH2P43246 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
MSH2P43246 RNU1-72P-201ENST00000362976 153 ntBASIC2.56□□□□□ -2
MSH2P43246 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSH2P43246 SNORA32.2-201ENST00000384049 122 ntBASIC2.56□□□□□ -2
MSH2P43246 MIR524-201ENST00000385242 87 ntBASIC2.56□□□□□ -2
MSH2P43246 RN7SKP158-201ENST00000410453 326 ntBASIC2.56□□□□□ -2
MSH2P43246 RNU6-293P-201ENST00000411259 106 ntBASIC2.56□□□□□ -2
MSH2P43246 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.56□□□□□ -2
MSH2P43246 UBE2V1P4-201ENST00000425374 344 ntBASIC2.56□□□□□ -2
MSH2P43246 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.56□□□□□ -2
MSH2P43246 AC243964.1-201ENST00000441814 261 ntBASIC2.56□□□□□ -2
MSH2P43246 IFNA11P-201ENST00000446352 526 ntBASIC2.56□□□□□ -2
MSH2P43246 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.56□□□□□ -2
MSH2P43246 AP001486.1-201ENST00000463339 476 ntBASIC2.56□□□□□ -2
MSH2P43246 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.56□□□□□ -2
MSH2P43246 AC068781.1-201ENST00000488231 618 ntBASIC2.56□□□□□ -2
MSH2P43246 MTCO2P30-201ENST00000503662 364 ntBASIC2.56□□□□□ -2
MSH2P43246 PRDX4P1-201ENST00000507189 574 ntBASIC2.56□□□□□ -2
MSH2P43246 AC107222.1-201ENST00000510899 637 ntBASIC2.56□□□□□ -2
MSH2P43246 AC010486.1-201ENST00000511793 424 ntBASIC2.56□□□□□ -2
MSH2P43246 RN7SKP256-201ENST00000517201 314 ntBASIC2.56□□□□□ -2
MSH2P43246 PRELID2P1-201ENST00000552837 301 ntBASIC2.56□□□□□ -2
MSH2P43246 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.56□□□□□ -2
MSH2P43246 AC027176.1-201ENST00000560204 514 ntBASIC2.56□□□□□ -2
MSH2P43246 MIR4801-201ENST00000582704 82 ntBASIC2.56□□□□□ -2
MSH2P43246 AC093913.1-201ENST00000614178 329 ntBASIC2.56□□□□□ -2
MSH2P43246 AC009033.1-201ENST00000624279 431 ntBASIC2.56□□□□□ -2
MSH2P43246 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
MSH2P43246 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.55□□□□□ -2
MSH2P43246 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
MSH2P43246 Y_RNA.72-201ENST00000362894 103 ntBASIC2.55□□□□□ -2
MSH2P43246 SNORA3A-201ENST00000364113 130 ntBASIC2.55□□□□□ -2
MSH2P43246 RNU1-91P-201ENST00000364746 163 ntBASIC2.55□□□□□ -2
MSH2P43246 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
MSH2P43246 MIR9-1-201ENST00000385198 89 ntBASIC2.55□□□□□ -2
MSH2P43246 MT-TL1-201ENST00000386347 75 ntBASIC2.55□□□□□ -2
MSH2P43246 RNU6-1106P-201ENST00000390845 107 ntBASIC2.55□□□□□ -2
MSH2P43246 RNU6-876P-201ENST00000391295 104 ntBASIC2.55□□□□□ -2
MSH2P43246 RNU6-1245P-201ENST00000411130 106 ntBASIC2.55□□□□□ -2
MSH2P43246 RPS15AP10-201ENST00000432472 382 ntBASIC2.55□□□□□ -2
MSH2P43246 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.55□□□□□ -2
MSH2P43246 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.55□□□□□ -2
MSH2P43246 CYP2C59P-201ENST00000457790 269 ntBASIC2.55□□□□□ -2
MSH2P43246 RNU6-864P-201ENST00000516256 108 ntBASIC2.55□□□□□ -2
MSH2P43246 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.55□□□□□ -2
MSH2P43246 AC026371.1-201ENST00000551867 419 ntBASIC2.55□□□□□ -2
MSH2P43246 AC105137.2-201ENST00000569073 466 ntBASIC2.55□□□□□ -2
MSH2P43246 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.55□□□□□ -2
MSH2P43246 AP001094.1-201ENST00000579805 193 ntBASIC2.55□□□□□ -2
MSH2P43246 MIR3672-201ENST00000584290 82 ntBASIC2.55□□□□□ -2
MSH2P43246 MIR3942-201ENST00000585264 109 ntBASIC2.55□□□□□ -2
MSH2P43246 AC009314.1-201ENST00000603871 304 ntBASIC2.55□□□□□ -2
MSH2P43246 AL138726.1-201ENST00000614873 333 ntBASIC2.55□□□□□ -2
MSH2P43246 AC009248.2-201ENST00000619826 254 ntBASIC2.55□□□□□ -2
MSH2P43246 DUXAP9-208ENST00000622815 614 ntBASIC2.55□□□□□ -2
MSH2P43246 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
MSH2P43246 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
MSH2P43246 RNU6-692P-201ENST00000384496 107 ntBASIC2.54□□□□□ -2
MSH2P43246 MIR634-201ENST00000385208 97 ntBASIC2.54□□□□□ -2
MSH2P43246 RNU2-23P-201ENST00000410545 195 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms