Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MIR578-201ENST00000384828 96 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 RPS20P2-201ENST00000402520 389 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC019070.1-201ENST00000415008 1024 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 RPL21P111-201ENST00000418453 477 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC123900.1-201ENST00000420390 96 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 EIF1P1-201ENST00000421436 341 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 CST2P1-201ENST00000425770 87 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 HSPE1P9-201ENST00000440046 311 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 GDI2P2-201ENST00000445131 608 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 RPS27AP8-201ENST00000452665 445 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 MTND1P12-201ENST00000455231 147 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 RPL9P9-202ENST00000466501 579 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC104982.1-201ENST00000478775 574 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC134050.1-201ENST00000495088 933 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC097473.1-201ENST00000508142 408 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC015688.6-201ENST00000577737 104 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC112187.2-201ENST00000604345 283 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AP002360.4-201ENST00000606980 481 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AL355802.3-201ENST00000607571 545 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC092106.3-201ENST00000611308 722 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 MIR6504-201ENST00000613520 61 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AC131159.1-201ENST00000621854 213 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 MIR8063-201ENST00000621930 81 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 AL133216.2-202ENST00000634512 349 ntBASIC0.82□□□□□ -2.28
HLA-DMBP28068 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.81□□□□□ -2.28
HLA-DMBP28068 RNU4-15P-201ENST00000362613 141 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 Y_RNA.191-201ENST00000363972 113 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 Y_RNA.224-201ENST00000364308 111 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 SNORA70.7-201ENST00000384159 133 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 RAP1BP3-201ENST00000407180 549 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 SNRPEP10-201ENST00000420249 274 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 MTND5P2-201ENST00000442927 1142 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 AL360271.2-201ENST00000447710 161 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 AC005741.1-201ENST00000511094 432 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 MTATP6P15-201ENST00000527233 835 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 AP003465.2-201ENST00000602571 373 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 DEFB131E-202ENST00000602581 683 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 SNORD114-21-201ENST00000606412 72 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 AC092140.2-201ENST00000618027 521 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 AP002782.1-201ENST00000623107 614 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.81□□□□□ -2.28
HLA-DMBP28068 AC095038.3-201ENST00000634439 195 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
HLA-DMBP28068 MTND5P35-201ENST00000557537 1720 ntBASIC0.81□□□□□ -2.28
HLA-DMBP28068 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNA5SP327-201ENST00000362494 101 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU6-78P-201ENST00000362897 107 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU6-1285P-201ENST00000363480 105 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 SNORD114-27-201ENST00000363766 70 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU6-1222P-201ENST00000384615 107 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU6-1179P-201ENST00000384667 107 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 MIR520A-201ENST00000384862 85 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU6-1000P-201ENST00000391066 106 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 MTND3P1-201ENST00000441336 220 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 SNRPGP9-201ENST00000456025 225 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 AL133373.1-201ENST00000497098 94 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU1-86P-201ENST00000516108 154 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU7-51P-201ENST00000516560 62 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 RNU1-107P-201ENST00000516617 154 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC115990.1-201ENST00000526957 301 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 MIR3118-1-201ENST00000581787 76 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC103810.9-201ENST00000606688 112 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC012409.4-201ENST00000612923 249 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC100821.1-201ENST00000523153 2479 ntBASIC0.8□□□□□ -2.28
HLA-DMBP28068 AC073343.1-201ENST00000328239 651 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 RNU6-26P-201ENST00000383985 107 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 EBAG9P1-201ENST00000418955 543 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 AC245047.4-201ENST00000433189 144 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 ZNF736P1Y-201ENST00000440402 1276 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.79□□□□□ -2.28
HLA-DMBP28068 RPS23P4-201ENST00000487908 423 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 AC104806.1-201ENST00000508720 308 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 ATP5EP1-201ENST00000510257 156 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 MIR449C-201ENST00000516047 92 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 SNORD60.2-201ENST00000516883 86 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 RNA5SP437-201ENST00000517249 129 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC0.79□□□□□ -2.28
HLA-DMBP28068 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.79□□□□□ -2.28
HLA-DMBP28068 ADI1P3-201ENST00000549509 470 ntBASIC0.79□□□□□ -2.28
HLA-DMBP28068 AC090115.3-201ENST00000553218 849 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms