Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RNU6-529P-201ENST00000363383 104 ntBASIC4.55□□□□□ -1.68
RFX1P22670 RNA5SP252-201ENST00000391131 119 ntBASIC4.55□□□□□ -1.68
RFX1P22670 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.55□□□□□ -1.68
RFX1P22670 RPL23AP46-201ENST00000438548 490 ntBASIC4.55□□□□□ -1.68
RFX1P22670 RPS29P7-201ENST00000439662 171 ntBASIC4.55□□□□□ -1.68
RFX1P22670 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.55□□□□□ -1.68
RFX1P22670 RN7SL691P-201ENST00000494487 301 ntBASIC4.55□□□□□ -1.68
RFX1P22670 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.55□□□□□ -1.68
RFX1P22670 SNORA25.14-201ENST00000516481 132 ntBASIC4.55□□□□□ -1.68
RFX1P22670 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.55□□□□□ -1.68
RFX1P22670 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.55□□□□□ -1.68
RFX1P22670 AC037487.3-201ENST00000606668 112 ntBASIC4.55□□□□□ -1.68
RFX1P22670 AC015813.4-201ENST00000610469 179 ntBASIC4.55□□□□□ -1.68
RFX1P22670 uc_338.14-201ENST00000613162 166 ntBASIC4.55□□□□□ -1.68
RFX1P22670 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.55□□□□□ -1.68
RFX1P22670 AL357075.2-201ENST00000614906 189 ntBASIC4.55□□□□□ -1.68
RFX1P22670 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.55□□□□□ -1.68
RFX1P22670 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
RFX1P22670 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.54□□□□□ -1.68
RFX1P22670 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
RFX1P22670 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.54□□□□□ -1.68
RFX1P22670 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
RFX1P22670 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
RFX1P22670 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
RFX1P22670 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
RFX1P22670 MIR448-201ENST00000362131 111 ntBASIC4.54□□□□□ -1.68
RFX1P22670 Y_RNA.179-201ENST00000363844 90 ntBASIC4.54□□□□□ -1.68
RFX1P22670 MIR147B-201ENST00000390185 80 ntBASIC4.54□□□□□ -1.68
RFX1P22670 AL133475.1-201ENST00000404414 305 ntBASIC4.54□□□□□ -1.68
RFX1P22670 AL160275.2-201ENST00000412010 394 ntBASIC4.54□□□□□ -1.68
RFX1P22670 AC138623.1-201ENST00000418060 216 ntBASIC4.54□□□□□ -1.68
RFX1P22670 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.54□□□□□ -1.68
RFX1P22670 RPS29P19-201ENST00000479709 171 ntBASIC4.54□□□□□ -1.68
RFX1P22670 SNRPGP20-201ENST00000604477 205 ntBASIC4.54□□□□□ -1.68
RFX1P22670 AL034555.1-201ENST00000604816 211 ntBASIC4.54□□□□□ -1.68
RFX1P22670 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
RFX1P22670 ZNF204P-201ENST00000416749 2397 ntBASIC4.54□□□□□ -1.68
RFX1P22670 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RFX1P22670 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
RFX1P22670 RNU1-62P-201ENST00000362599 164 ntBASIC4.53□□□□□ -1.68
RFX1P22670 Y_RNA.76-201ENST00000362931 109 ntBASIC4.53□□□□□ -1.68
RFX1P22670 Y_RNA.83-201ENST00000363005 113 ntBASIC4.53□□□□□ -1.68
RFX1P22670 RNU6-799P-201ENST00000363567 107 ntBASIC4.53□□□□□ -1.68
RFX1P22670 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
RFX1P22670 RPL21P65-201ENST00000406094 466 ntBASIC4.53□□□□□ -1.68
RFX1P22670 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.53□□□□□ -1.68
RFX1P22670 AIMP1P2-201ENST00000425294 312 ntBASIC4.53□□□□□ -1.68
RFX1P22670 MTND2P29-201ENST00000438595 412 ntBASIC4.53□□□□□ -1.68
RFX1P22670 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.53□□□□□ -1.68
RFX1P22670 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.53□□□□□ -1.68
RFX1P22670 AC008749.1-201ENST00000597650 306 ntBASIC4.53□□□□□ -1.68
RFX1P22670 uc_338.32-201ENST00000615087 172 ntBASIC4.53□□□□□ -1.68
RFX1P22670 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
RFX1P22670 MTND5P35-201ENST00000557537 1720 ntBASIC4.52□□□□□ -1.69
RFX1P22670 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.52□□□□□ -1.69
RFX1P22670 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
RFX1P22670 RNU6-1175P-201ENST00000365200 107 ntBASIC4.52□□□□□ -1.69
RFX1P22670 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
RFX1P22670 MIR208B-201ENST00000401172 77 ntBASIC4.52□□□□□ -1.69
RFX1P22670 CBX3P9-201ENST00000402326 552 ntBASIC4.52□□□□□ -1.69
RFX1P22670 RNA5SP201-201ENST00000410316 124 ntBASIC4.52□□□□□ -1.69
RFX1P22670 RPL23AP36-201ENST00000413895 458 ntBASIC4.52□□□□□ -1.69
RFX1P22670 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.52□□□□□ -1.69
RFX1P22670 RNA5SP246-201ENST00000458909 119 ntBASIC4.52□□□□□ -1.69
RFX1P22670 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.52□□□□□ -1.69
RFX1P22670 AC005176.2-201ENST00000596933 147 ntBASIC4.52□□□□□ -1.69
RFX1P22670 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
RFX1P22670 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
RFX1P22670 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
RFX1P22670 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
RFX1P22670 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
RFX1P22670 AC099654.7-201ENST00000635788 2127 ntBASIC4.51□□□□□ -1.69
RFX1P22670 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.51□□□□□ -1.69
RFX1P22670 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.51□□□□□ -1.69
RFX1P22670 AC008725.1-201ENST00000605123 2263 ntBASIC4.51□□□□□ -1.69
RFX1P22670 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.51□□□□□ -1.69
RFX1P22670 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
RFX1P22670 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
RFX1P22670 Y_RNA.199-201ENST00000364014 102 ntBASIC4.51□□□□□ -1.69
RFX1P22670 SNORD74.4-201ENST00000364129 80 ntBASIC4.51□□□□□ -1.69
RFX1P22670 RNU6-213P-201ENST00000384051 104 ntBASIC4.51□□□□□ -1.69
RFX1P22670 RNU6-793P-201ENST00000384233 104 ntBASIC4.51□□□□□ -1.69
RFX1P22670 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
RFX1P22670 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC4.51□□□□□ -1.69
RFX1P22670 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.51□□□□□ -1.69
RFX1P22670 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.51□□□□□ -1.69
RFX1P22670 RPL7P49-201ENST00000471402 708 ntBASIC4.51□□□□□ -1.69
RFX1P22670 AC025554.1-201ENST00000505641 188 ntBASIC4.51□□□□□ -1.69
RFX1P22670 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.51□□□□□ -1.69
RFX1P22670 RNA5SP49-201ENST00000516450 115 ntBASIC4.51□□□□□ -1.69
RFX1P22670 RNA5SP519-201ENST00000516480 119 ntBASIC4.51□□□□□ -1.69
RFX1P22670 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.51□□□□□ -1.69
RFX1P22670 MIR4474-201ENST00000579189 78 ntBASIC4.51□□□□□ -1.69
RFX1P22670 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC4.51□□□□□ -1.69
RFX1P22670 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.51□□□□□ -1.69
RFX1P22670 KLKP1-201ENST00000595979 403 ntBASIC4.51□□□□□ -1.69
RFX1P22670 AC069200.1-201ENST00000609511 323 ntBASIC4.51□□□□□ -1.69
RFX1P22670 AL391261.4-201ENST00000616012 481 ntBASIC4.51□□□□□ -1.69
RFX1P22670 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
RFX1P22670 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms