Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR34A-201ENST00000385130 110 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 RNA5SP354-201ENST00000391247 136 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 RHEBP3-201ENST00000411920 351 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 Z85995.1-201ENST00000415547 335 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.79□□□□□ -1.8
COL6A1P12109 MYL8P-204ENST00000431574 518 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 RPL23AP45-201ENST00000476406 468 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AK3P2-201ENST00000507976 429 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 RNU6-897P-201ENST00000517135 105 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AC034114.1-201ENST00000520293 285 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 MIR3945-201ENST00000581853 98 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.79□□□□□ -1.8
COL6A1P12109 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.79□□□□□ -1.8
COL6A1P12109 KLKP1-201ENST00000595979 403 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AC006557.5-201ENST00000603126 811 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AC096772.1-201ENST00000609146 564 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 AC107294.3-201ENST00000609211 526 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.79□□□□□ -1.8
COL6A1P12109 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A1P12109 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.79□□□□□ -1.8
COL6A1P12109 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
COL6A1P12109 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A1P12109 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL6A1P12109 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.78□□□□□ -1.8
COL6A1P12109 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A1P12109 ZNF826P-207ENST00000622273 1910 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 Y_RNA.60-201ENST00000362831 98 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 RNU1-76P-201ENST00000362903 159 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 RNU1-105P-201ENST00000363470 161 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 SNORA5B-201ENST00000363786 132 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 Y_RNA.478-201ENST00000384358 107 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 MIR10A-201ENST00000385043 110 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 Y_RNA.592-201ENST00000410274 109 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 AC006989.1-201ENST00000427212 131 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 PIGFP3-201ENST00000441918 722 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 AC109925.1-201ENST00000478069 331 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 RPL30P10-201ENST00000488148 337 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.78□□□□□ -1.8
COL6A1P12109 Y_RNA.680-201ENST00000516441 93 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.78□□□□□ -1.8
COL6A1P12109 AC109329.1-201ENST00000518744 317 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.78□□□□□ -1.8
COL6A1P12109 AC007375.1-201ENST00000554513 578 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 U7.8-201ENST00000619968 63 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 AC243829.7-201ENST00000633081 225 ntBASIC3.78□□□□□ -1.8
COL6A1P12109 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A1P12109 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL6A1P12109 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
COL6A1P12109 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.81
COL6A1P12109 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
COL6A1P12109 AP003122.5-201ENST00000527668 3766 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 RNA5SP432-201ENST00000362480 116 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 RNU6-209P-201ENST00000384118 107 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 RNU6-611P-201ENST00000384276 104 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 RNU1-89P-201ENST00000384592 164 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 Y_RNA.562-201ENST00000384695 113 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 MTCYBP2-201ENST00000407745 171 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 RNU2-64P-201ENST00000411315 191 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A1P12109 AL117339.3-201ENST00000418733 162 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 Z82210.1-201ENST00000440037 231 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A1P12109 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A1P12109 TRBVB-201ENST00000477100 408 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A1P12109 SNORA31.21-201ENST00000517180 77 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 AP003733.2-201ENST00000529409 171 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.77□□□□□ -1.81
COL6A1P12109 MIR486-1-201ENST00000612171 68 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.77□□□□□ -1.81
COL6A1P12109 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.77□□□□□ -1.81
COL6A1P12109 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A1P12109 AC022336.2-201ENST00000568966 2538 ntBASIC3.77□□□□□ -1.81
COL6A1P12109 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL6A1P12109 MTND5P6-201ENST00000422338 1798 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.76□□□□□ -1.81
COL6A1P12109 MIR449A-201ENST00000362113 91 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 Y_RNA.26-201ENST00000362539 101 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 Y_RNA.183-201ENST00000363882 113 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 RNA5SP42-201ENST00000364278 115 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 RNU6-806P-201ENST00000365147 105 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AL139095.1-201ENST00000404326 391 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 MIR548I3-201ENST00000408378 149 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 MIR548I1-201ENST00000408810 149 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.76□□□□□ -1.81
COL6A1P12109 RPS29P31-201ENST00000446147 164 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 SUMO1P2-201ENST00000452524 304 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 RN7SKP210-201ENST00000459176 261 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 KC877373.1-201ENST00000479066 408 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.76□□□□□ -1.81
COL6A1P12109 RNU6-612P-201ENST00000516909 102 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 RNU6-570P-201ENST00000517051 105 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AC025755.1-201ENST00000521306 278 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.76□□□□□ -1.81
COL6A1P12109 AL590705.4-201ENST00000532209 134 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.76□□□□□ -1.81
COL6A1P12109 AC022080.3-201ENST00000544433 482 ntBASIC3.76□□□□□ -1.81
COL6A1P12109 AC103996.1-201ENST00000555468 102 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms