Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SEPT14P2-201ENST00000453405 183 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 RNU6-1208P-201ENST00000459588 107 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.19□□□□□ -1.9
HMGB1P09429 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC3.19□□□□□ -1.9
HMGB1P09429 SEPT14P4-201ENST00000513445 186 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 RNA5SP76-201ENST00000516277 87 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 RNU6-612P-201ENST00000516909 102 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 FO082796.1-201ENST00000523795 183 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HMGB1P09429 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.19□□□□□ -1.9
HMGB1P09429 MIR3670-2-201ENST00000582974 65 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 MIR3670-1-201ENST00000584160 65 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 MIR3670-3-201ENST00000584855 65 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AC060766.3-201ENST00000591442 263 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 MIR3670-4-201ENST00000612260 65 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AC104237.2-201ENST00000612456 443 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.19□□□□□ -1.9
HMGB1P09429 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HMGB1P09429 MIR6733-201ENST00000635723 61 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AC245060.5-201ENST00000610778 3293 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 RNU1-112P-201ENST00000364401 164 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 SNORD32B-201ENST00000364460 84 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 RNU6-26P-201ENST00000383985 107 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 RNU6-483P-201ENST00000384088 108 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 MIR128-1-201ENST00000384921 82 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 AL512604.1-201ENST00000404812 257 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 MTCO3P41-201ENST00000414801 328 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 AC107083.1-201ENST00000439643 279 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 AC105313.1-201ENST00000509121 353 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 RNA5SP490-201ENST00000517141 136 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 AL512310.1-201ENST00000548639 172 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.18□□□□□ -1.9
HMGB1P09429 AL078605.1-201ENST00000603529 500 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 AL162373.1-201ENST00000620433 407 ntBASIC3.18□□□□□ -1.9
HMGB1P09429 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HMGB1P09429 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
HMGB1P09429 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HMGB1P09429 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HMGB1P09429 SNORA48.2-201ENST00000390926 124 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AL357139.1-201ENST00000407792 426 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 MTND3P9-201ENST00000429526 346 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 MRPS10P2-201ENST00000431226 381 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 HMGN2P3-201ENST00000433603 273 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 HMGN2P5-201ENST00000436882 273 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 MRPL50P4-201ENST00000446432 475 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AC104564.1-201ENST00000493028 407 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AC019235.1-201ENST00000503847 207 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 ELOCP29-201ENST00000588193 334 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AL162413.1-201ENST00000603198 110 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 Z98751.3-201ENST00000604447 521 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AL022345.1-201ENST00000607292 135 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AC092954.2-201ENST00000609103 430 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 AC135507.2-201ENST00000612443 309 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 SDR42E1P4-201ENST00000620894 481 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 OR4G1P-203ENST00000641984 1631 ntBASIC3.17□□□□□ -1.9
HMGB1P09429 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.16□□□□□ -1.9
HMGB1P09429 MTND4P23-201ENST00000447723 1363 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HMGB1P09429 Y_RNA.231-201ENST00000364358 102 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 MIR597-201ENST00000384968 97 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AC105272.1-201ENST00000438604 198 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.16□□□□□ -1.9
HMGB1P09429 RPL9P9-202ENST00000466501 579 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 RPL9P33-201ENST00000484311 566 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AC132942.1-201ENST00000486753 483 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AC008628.2-201ENST00000502605 298 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 RNU6-567P-201ENST00000516746 107 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AC079600.2-201ENST00000550076 130 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AC021231.3-201ENST00000558497 370 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 HMGB1P33-201ENST00000563485 527 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.16□□□□□ -1.9
HMGB1P09429 AC243960.4-201ENST00000600532 288 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 AC097065.2-201ENST00000608159 533 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.16□□□□□ -1.9
HMGB1P09429 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.15□□□□□ -1.9
HMGB1P09429 U3.9-201ENST00000363823 204 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 RNU6-234P-201ENST00000365229 104 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 RNU6-1329P-201ENST00000365664 107 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 EIF4E2P1-201ENST00000393781 255 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 AL360182.1-201ENST00000397433 468 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 MTCYBP2-201ENST00000407745 171 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 RN7SKP284-201ENST00000411002 343 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.15□□□□□ -1.91
HMGB1P09429 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.15□□□□□ -1.91
HMGB1P09429 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.15□□□□□ -1.91
HMGB1P09429 AL109933.2-201ENST00000452651 260 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 AC083904.1-201ENST00000487828 231 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 RNU6-1332P-201ENST00000516666 104 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 SNORD60.2-201ENST00000516883 86 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 MIR4635-201ENST00000583759 79 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.15□□□□□ -1.91
HMGB1P09429 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
HMGB1P09429 AL137790.1-201ENST00000634283 177 ntBASIC3.15□□□□□ -1.91
HMGB1P09429 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HMGB1P09429 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HMGB1P09429 RNU6-1164P-201ENST00000364428 107 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 RNU6-214P-201ENST00000384130 107 ntBASIC3.14□□□□□ -1.91
HMGB1P09429 SNORA26.3-201ENST00000391119 136 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms