Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD4P09016 AC023141.4-201ENST00000412031 328 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 VN1R36P-201ENST00000414936 291 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD4P09016 AC016831.2-201ENST00000417179 352 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD4P09016 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXD4P09016 PPP1R2P5-201ENST00000457256 603 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 snoU109.2-201ENST00000459316 135 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC107626.1-201ENST00000471084 183 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 RPL23AP70-201ENST00000483361 460 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC079804.2-201ENST00000490376 200 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 TRBVA-201ENST00000498804 316 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.25□□□□□ -2.05
HOXD4P09016 AC103851.1-201ENST00000506833 274 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 RNA5SP320-201ENST00000516263 124 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 RNU6-1088P-201ENST00000516850 104 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD4P09016 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXD4P09016 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
HOXD4P09016 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXD4P09016 AC025423.5-201ENST00000550230 219 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.25□□□□□ -2.05
HOXD4P09016 MIR5694-201ENST00000581190 76 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 MIR3672-201ENST00000584290 82 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AC005261.5-201ENST00000596280 355 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD4P09016 AC025253.1-201ENST00000613623 543 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 MIR203B-201ENST00000636080 86 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.25□□□□□ -2.05
HOXD4P09016 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
HOXD4P09016 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.24□□□□□ -2.05
HOXD4P09016 RNA5SP289-201ENST00000362332 137 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNA5SP456-201ENST00000364002 114 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNU6-461P-201ENST00000364195 107 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 Y_RNA.301-201ENST00000364990 103 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 U8.8-201ENST00000365399 135 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNU6-898P-201ENST00000365627 104 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 MIR518D-201ENST00000385014 87 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AL078595.1-201ENST00000404458 226 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNU2-41P-201ENST00000410991 178 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXD4P09016 AL365400.1-201ENST00000431854 640 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 MTND4LP16-201ENST00000440828 295 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 OSTCP8-201ENST00000445117 448 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AL031659.1-201ENST00000447075 539 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXD4P09016 RNU7-138P-201ENST00000459479 64 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AC133134.1-201ENST00000466800 359 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RPL23AP45-201ENST00000476406 468 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RPS29P21-201ENST00000496272 170 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNU6-1332P-201ENST00000516666 104 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AC069113.1-201ENST00000517763 267 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AP005597.4-201ENST00000526762 229 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 COX6CP5-201ENST00000527162 228 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AL158827.2-201ENST00000602494 330 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AL670379.10-201ENST00000604330 253 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AL670379.9-201ENST00000605428 253 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 RNU6-85P-201ENST00000605989 107 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 uc_338.5-201ENST00000611839 155 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 AL691447.3-201ENST00000635020 330 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 TPTEP1-208ENST00000636884 213 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXD4P09016 AC135776.4-201ENST00000624300 1904 ntBASIC2.24□□□□□ -2.05
HOXD4P09016 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXD4P09016 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
HOXD4P09016 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXD4P09016 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
HOXD4P09016 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
HOXD4P09016 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-37P-201ENST00000362692 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 Y_RNA.212-201ENST00000364177 102 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-11P-201ENST00000364234 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 Y_RNA.263-201ENST00000364659 114 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-25P-201ENST00000383873 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-1-201ENST00000383898 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-48P-201ENST00000384161 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-36P-201ENST00000384172 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-1013P-201ENST00000384180 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-4P-201ENST00000384205 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-5P-201ENST00000384238 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-72P-201ENST00000384285 79 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-3P-201ENST00000384314 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-16P-201ENST00000384385 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-15P-201ENST00000384534 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-2-201ENST00000384627 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-29P-201ENST00000384637 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-9-201ENST00000384776 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU6-33P-201ENST00000384793 107 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 SNORD73A-201ENST00000386062 65 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 RNU2-49P-201ENST00000410666 184 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.23□□□□□ -2.05
HOXD4P09016 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
HOXD4P09016 AL356320.1-201ENST00000429616 163 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXD4P09016 HMGB1P18-201ENST00000438801 619 ntBASIC2.23□□□□□ -2.05
HOXD4P09016 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXD4P09016 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms