Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC011979.2-201ENST00000527568 352 ntBASIC1.47□□□□□ -2.17
NPHP4O75161 AP005639.2-201ENST00000527592 928 ntBASIC1.47□□□□□ -2.17
NPHP4O75161 AC091489.2-201ENST00000566263 604 ntBASIC1.47□□□□□ -2.17
NPHP4O75161 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.47□□□□□ -2.17
NPHP4O75161 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
NPHP4O75161 RNU6-1010P-201ENST00000362757 107 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 SNORD113-6-201ENST00000363345 75 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 RNU4-1-201ENST00000363925 141 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 RNU6-743P-201ENST00000364151 106 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 RNU4-38P-201ENST00000364472 129 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 SNORD14B-201ENST00000364533 90 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 MIR1283-2-201ENST00000408621 87 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AL031779.1-201ENST00000415663 330 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 RPL22P18-201ENST00000417197 377 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.46□□□□□ -2.18
NPHP4O75161 AL627311.1-201ENST00000431514 115 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AL606662.1-201ENST00000445763 553 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 RPS27P1-201ENST00000450552 247 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AL590365.1-201ENST00000450788 243 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 MTND1P12-201ENST00000455231 147 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.46□□□□□ -2.18
NPHP4O75161 AC010587.1-201ENST00000505809 469 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 RBBP4P6-201ENST00000508098 202 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.46□□□□□ -2.18
NPHP4O75161 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.46□□□□□ -2.18
NPHP4O75161 AP005597.4-201ENST00000526762 229 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.46□□□□□ -2.18
NPHP4O75161 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.46□□□□□ -2.18
NPHP4O75161 AP000763.2-201ENST00000540641 163 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.46□□□□□ -2.18
NPHP4O75161 MIR1273G-201ENST00000577677 100 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 SNRPGP17-201ENST00000603780 214 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 SNORD114-21-201ENST00000606412 72 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 MIR3529-201ENST00000637713 78 ntBASIC1.46□□□□□ -2.18
NPHP4O75161 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
NPHP4O75161 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
NPHP4O75161 AC008555.8-201ENST00000623602 2168 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 MIR412-201ENST00000362142 91 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 snoU2_19.1-201ENST00000362361 80 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 RNU6-212P-201ENST00000362642 104 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 RNU5F-6P-201ENST00000362979 116 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 RNU6-384P-201ENST00000364900 104 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 RNU6-622P-201ENST00000384272 103 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 MIR150-201ENST00000385048 84 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.45□□□□□ -2.18
NPHP4O75161 CALM2P2-201ENST00000428512 440 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.45□□□□□ -2.18
NPHP4O75161 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.45□□□□□ -2.18
NPHP4O75161 AC015922.2-201ENST00000435593 184 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 AL353752.1-201ENST00000454946 260 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
NPHP4O75161 AC112204.1-201ENST00000502591 103 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 ADI1P3-201ENST00000549509 470 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 MIR5697-201ENST00000578045 78 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 AC078795.2-201ENST00000602835 1252 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 TUSC7.1-201ENST00000610969 165 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 AL359547.2-201ENST00000615810 418 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 AC027807.2-201ENST00000616099 408 ntBASIC1.45□□□□□ -2.18
NPHP4O75161 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.45□□□□□ -2.18
NPHP4O75161 AL442644.1-201ENST00000454390 3105 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 RNU5E-1-201ENST00000362477 120 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 MIR597-201ENST00000384968 97 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL158823.1-201ENST00000418441 478 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AC244636.1-201ENST00000421152 228 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL591704.2-201ENST00000421658 181 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL589872.1-201ENST00000426602 288 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 CBX3P6-201ENST00000430257 527 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL365184.2-201ENST00000431139 435 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.44□□□□□ -2.18
NPHP4O75161 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.44□□□□□ -2.18
NPHP4O75161 HSPE1P21-201ENST00000438283 308 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.44□□□□□ -2.18
NPHP4O75161 PRELID3BP1-201ENST00000457142 540 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 RNU6-311P-201ENST00000516224 102 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 BNIP3P6-201ENST00000549284 499 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.44□□□□□ -2.18
NPHP4O75161 AC012409.4-201ENST00000612923 249 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 MIR6857-201ENST00000613267 93 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 AL359314.1-201ENST00000616913 261 ntBASIC1.44□□□□□ -2.18
NPHP4O75161 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
NPHP4O75161 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.43□□□□□ -2.18
NPHP4O75161 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
NPHP4O75161 RNU6-655P-201ENST00000362858 107 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 RNU6-546P-201ENST00000383991 107 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 SNORA24.1-201ENST00000384401 135 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 RNU11-3P-201ENST00000391111 133 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 OR9R1P-201ENST00000412200 877 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.43□□□□□ -2.18
NPHP4O75161 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.43□□□□□ -2.18
NPHP4O75161 MTCO3P46-201ENST00000425787 232 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.43□□□□□ -2.18
NPHP4O75161 HSFY7P-201ENST00000432672 318 ntBASIC1.43□□□□□ -2.18
NPHP4O75161 AC119618.1-201ENST00000434191 222 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms