Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MORF4L1P6-201ENST00000418771 268 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AL590135.1-201ENST00000422215 156 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC019205.3-201ENST00000424573 156 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 CBX3P6-201ENST00000430257 527 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC016700.2-201ENST00000446011 156 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC245102.2-201ENST00000448956 180 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AL109933.2-201ENST00000452651 260 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC087884.1-201ENST00000469738 328 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC015911.1-201ENST00000495111 156 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 SNORA14.1-201ENST00000516113 141 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 RNU6-189P-201ENST00000516120 101 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 RNU6-1038P-201ENST00000516516 104 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 MIR4424-201ENST00000585257 86 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC092747.3-201ENST00000603769 301 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AL356157.2-201ENST00000605122 111 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC018889.1-201ENST00000605372 397 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AC124864.2-201ENST00000624736 186 ntBASIC2.02□□□□□ -2.09
FOXA2Q9Y261 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA2Q9Y261 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AP000560.1-201ENST00000624150 1937 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 RNU2-48P-201ENST00000410694 191 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 SNAP23P1-201ENST00000433229 246 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 IFNA20P-201ENST00000436840 528 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 PRELID3BP1-201ENST00000457142 540 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 CENPUP1-201ENST00000526649 1202 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 TRAV32-201ENST00000553993 340 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 OR11H5P-201ENST00000554039 926 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 MIR4287-201ENST00000579398 78 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC103591.3-201ENST00000608684 209 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AL132822.1-201ENST00000617063 513 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 AC068792.1-201ENST00000621354 417 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 ZNF658B-202ENST00000615961 3375 ntBASIC2.01□□□□□ -2.09
FOXA2Q9Y261 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA2Q9Y261 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
FOXA2Q9Y261 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2□□□□□ -2.09
FOXA2Q9Y261 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2□□□□□ -2.09
FOXA2Q9Y261 AL596028.1-201ENST00000326971 197 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 RNU6-1159P-201ENST00000362933 107 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 RNU6-82P-201ENST00000363970 107 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 SNORA41-201ENST00000384675 132 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 MIR518A2-201ENST00000384966 87 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 POLHP1-201ENST00000411806 470 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2□□□□□ -2.09
FOXA2Q9Y261 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2□□□□□ -2.09
FOXA2Q9Y261 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2□□□□□ -2.09
FOXA2Q9Y261 IPO7P1-201ENST00000442031 636 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2□□□□□ -2.09
FOXA2Q9Y261 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2□□□□□ -2.09
FOXA2Q9Y261 RPL9P6-201ENST00000492764 598 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 AC145146.1-201ENST00000496370 254 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 AC007375.1-201ENST00000554513 578 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2□□□□□ -2.09
FOXA2Q9Y261 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2□□□□□ -2.09
FOXA2Q9Y261 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
FOXA2Q9Y261 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2□□□□□ -2.09
FOXA2Q9Y261 RNU6-142P-201ENST00000384019 107 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 MIR27B-201ENST00000385129 97 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 MIR29C-201ENST00000385231 88 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 SNORD73A-201ENST00000386062 65 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 MIR1294-201ENST00000408503 142 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC078809.1-201ENST00000427601 140 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC016632.1-201ENST00000503994 196 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC009646.1-201ENST00000510455 318 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 IGLV3-17-201ENST00000519099 244 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC121758.2-201ENST00000553271 193 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC027807.1-201ENST00000559921 996 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.99□□□□□ -2.09
FOXA2Q9Y261 AC006023.1-201ENST00000603944 259 ntBASIC1.99□□□□□ -2.09
FOXA2Q9Y261 MIR6817-201ENST00000615588 66 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms