Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.372-201ENST00000365599 102 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 Y_RNA.378-201ENST00000365652 113 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 RNU1-138P-201ENST00000384093 164 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 SNORD116-4-201ENST00000384733 96 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 MIR514A2-201ENST00000385131 88 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 MIR514A3-201ENST00000385132 88 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS28Q9UK41 AL589823.1-201ENST00000429577 183 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.55□□□□□ -2
VPS28Q9UK41 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.55□□□□□ -2
VPS28Q9UK41 Y_RNA.704-201ENST00000516851 102 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.55□□□□□ -2
VPS28Q9UK41 CYCSP26-201ENST00000534107 320 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 AL118558.2-201ENST00000556294 238 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 AC012557.2-201ENST00000605919 418 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 AC104237.2-201ENST00000612456 443 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS28Q9UK41 AC068137.3-201ENST00000639191 341 ntBASIC2.55□□□□□ -2
VPS28Q9UK41 SNORA3A-201ENST00000364113 130 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 RNU6-1141P-201ENST00000364520 107 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 SNORA25B-201ENST00000365507 128 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS28Q9UK41 RNU6-483P-201ENST00000384088 108 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 RNU6-692P-201ENST00000384496 107 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 RNU6-1274P-201ENST00000384557 107 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 MIR518C-201ENST00000384822 101 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 MIR181A1-201ENST00000385026 110 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.54□□□□□ -2
VPS28Q9UK41 AL590002.1-201ENST00000406554 418 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 IFNA11P-201ENST00000446352 526 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 RNU6-1208P-201ENST00000459588 107 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 RPL38P4-201ENST00000502376 214 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.54□□□□□ -2
VPS28Q9UK41 RNU6-720P-201ENST00000516363 108 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.54□□□□□ -2
VPS28Q9UK41 AC118273.2-201ENST00000532092 465 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 AL157687.1-201ENST00000554853 619 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.54□□□□□ -2
VPS28Q9UK41 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.54□□□□□ -2
VPS28Q9UK41 EIF1P4-201ENST00000572664 335 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 MIR3126-201ENST00000577443 74 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.54□□□□□ -2
VPS28Q9UK41 AC004492.1-201ENST00000607036 742 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 AC092807.2-201ENST00000609367 243 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
VPS28Q9UK41 AC007336.1-201ENST00000576365 3828 ntBASIC2.54□□□□□ -2
VPS28Q9UK41 snoU2_19.1-201ENST00000362361 80 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 RNU6-1285P-201ENST00000363480 105 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 Y_RNA.231-201ENST00000364358 102 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 RNU6-1068P-201ENST00000410958 103 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.53□□□□□ -2
VPS28Q9UK41 RPS15AP10-201ENST00000432472 382 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 SNAP23P1-201ENST00000433229 246 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 AL353752.1-201ENST00000454946 260 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 HMGB3P3-201ENST00000510526 400 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 SNORA19.2-201ENST00000516013 114 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 RNU6-1069P-201ENST00000516612 133 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AC087854.1-201ENST00000519706 414 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 AK6P1-201ENST00000540219 478 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.53□□□□□ -2
VPS28Q9UK41 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 AL356157.2-201ENST00000605122 111 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.53□□□□□ -2
VPS28Q9UK41 DISC2.1-201ENST00000612827 205 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 CTSLP2-204ENST00000629029 392 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 OR4G1P-203ENST00000641984 1631 ntBASIC2.53□□□□□ -2
VPS28Q9UK41 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
VPS28Q9UK41 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 RNA5SP456-201ENST00000364002 114 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 U8.8-201ENST00000365399 135 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 RNU6-43P-201ENST00000384302 107 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AL590556.1-201ENST00000423231 483 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 USP9YP18-201ENST00000425912 695 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 MTCO2P3-201ENST00000442543 421 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 SNRPGP7-201ENST00000469016 106 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AC022447.4-201ENST00000504053 364 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 AC009127.3-201ENST00000570531 403 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS28Q9UK41 MIR4435-1-201ENST00000582552 80 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AC009314.1-201ENST00000603871 304 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AL049779.4-201ENST00000604500 156 ntBASIC2.52□□□□□ -2.01
VPS28Q9UK41 AF250324.2-201ENST00000608299 610 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms