Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 RPL21P75-201ENST00000396599 483 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RPL21P28-201ENST00000401418 483 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RNU4-14P-201ENST00000410858 122 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC003685.2-201ENST00000422795 395 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 EIF4EP2-201ENST00000422816 654 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC009969.1-201ENST00000438726 172 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RPL21P10-201ENST00000463521 490 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RPL21P39-201ENST00000463605 483 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC090525.1-201ENST00000479116 478 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC087190.1-201ENST00000484462 480 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC093591.1-201ENST00000491435 481 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RPL21P129-201ENST00000491732 478 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RPL21P16-201ENST00000495531 483 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC110794.1-201ENST00000505816 425 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 AL355375.2-201ENST00000574825 175 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 MIR3923-201ENST00000579521 83 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 MIR4795-201ENST00000584182 89 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 AL713866.2-201ENST00000603579 219 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC016727.1-205ENST00000605437 569 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
DDX56Q9NY93 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
DDX56Q9NY93 AC135776.4-201ENST00000624300 1904 ntBASIC3.32□□□□□ -1.88
DDX56Q9NY93 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 Y_RNA.61-201ENST00000362835 102 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 SNORA62.3-201ENST00000365110 153 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 RNU6-968P-201ENST00000384076 107 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 MIR490-201ENST00000384865 128 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 MIR134-201ENST00000385258 73 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 SNORD5.1-201ENST00000458800 75 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 RN7SL293P-201ENST00000481765 281 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 Y_RNA.675-201ENST00000516389 149 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
DDX56Q9NY93 AL355297.2-201ENST00000604792 129 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 AL359757.2-201ENST00000624309 274 ntBASIC3.31□□□□□ -1.88
DDX56Q9NY93 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
DDX56Q9NY93 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
DDX56Q9NY93 Y_RNA.58-201ENST00000362807 102 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 Y_RNA.154-201ENST00000363624 102 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 SNORA38-201ENST00000363946 132 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 RNY3P1-201ENST00000365085 102 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 RNY3-201ENST00000365484 102 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 RNU6-1286P-201ENST00000383871 107 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 Y_RNA.490-201ENST00000384413 102 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 AL031121.1-201ENST00000406553 254 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC090515.1-201ENST00000465295 476 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC091874.1-201ENST00000511402 339 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC034105.4-201ENST00000568304 277 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 7SK.7-201ENST00000603504 247 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC113139.1-201ENST00000605049 239 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 PISRT1.1-201ENST00000616930 107 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DDX56Q9NY93 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC233981.2-201ENST00000611524 1614 ntBASIC3.3□□□□□ -1.88
DDX56Q9NY93 AC069528.2-201ENST00000624849 1991 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 MTND4P29-201ENST00000503122 1372 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 snoU2_19.1-201ENST00000362361 80 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 RNU1-72P-201ENST00000362976 153 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 SNORA46-201ENST00000384762 135 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 AL513124.1-201ENST00000450410 614 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 Y_RNA.708-201ENST00000516950 96 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 MTCO3P13-201ENST00000577757 781 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 AC078899.3-201ENST00000599065 212 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 AC018462.2-201ENST00000605375 395 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 AC137590.2-201ENST00000619709 240 ntBASIC3.29□□□□□ -1.88
DDX56Q9NY93 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.29□□□□□ -1.88
DDX56Q9NY93 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
DDX56Q9NY93 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
DDX56Q9NY93 Y_RNA.67-201ENST00000362870 100 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC3.28□□□□□ -1.88
DDX56Q9NY93 Y_RNA.384-201ENST00000383909 102 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 MIR95-201ENST00000385072 81 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 RPL21P3-201ENST00000395517 478 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 HMGB3P2-201ENST00000411913 584 ntBASIC3.28□□□□□ -1.88
DDX56Q9NY93 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 205.5 ms