Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 RNU1-140P-201ENST00000365040 165 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 RNU1-115P-201ENST00000365329 160 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 Y_RNA.364-201ENST00000365532 101 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 SNORA7.4-201ENST00000384249 137 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 Y_RNA.577-201ENST00000384794 101 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 RNA5SP229-201ENST00000410809 99 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.32□□□□□ -1.88
TDP1Q9NUW8 SNORA25.10-201ENST00000515926 124 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 RNU5F-8P-201ENST00000515941 111 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 SNORD19.2-201ENST00000516978 73 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AP002404.1-201ENST00000532005 451 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 EIF4BP1-201ENST00000554881 351 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AC092447.9-201ENST00000603395 144 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AC009541.1-201ENST00000438279 2662 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 AL079305.1-201ENST00000623159 3008 ntBASIC3.32□□□□□ -1.88
TDP1Q9NUW8 HAUS6P2-201ENST00000433254 2404 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 SNORA14A-201ENST00000364773 135 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC117470.1-201ENST00000381974 330 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AL365496.1-201ENST00000426885 215 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 RNU6-1137P-201ENST00000517073 99 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC022080.3-201ENST00000544433 482 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 MIR5701-3-201ENST00000578890 82 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 LARP7P3-201ENST00000579888 337 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 MIR5701-1-201ENST00000585138 82 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 MIR5701-2-201ENST00000615634 82 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC093010.3-201ENST00000570269 15214 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC010889.1-201ENST00000566193 2666 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 AC110774.1-201ENST00000623567 2018 ntBASIC3.31□□□□□ -1.88
TDP1Q9NUW8 RBBP8P1-201ENST00000449447 1844 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 SNORD32A-201ENST00000364805 84 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 Y_RNA.314-201ENST00000365114 102 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 MIR544A-201ENST00000384855 91 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 RNU6-750P-201ENST00000390946 107 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 MRPL42P3-201ENST00000401492 326 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 RNU6-1156P-201ENST00000410365 100 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 COTL1P1-201ENST00000422309 375 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 PTGES3P4-201ENST00000426243 356 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AC012308.1-201ENST00000451232 178 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AC091874.1-201ENST00000511402 339 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 NDUFB9P3-201ENST00000521269 501 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AC023442.1-201ENST00000531247 422 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 UBL5P2-201ENST00000583788 219 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AC060766.3-201ENST00000591442 263 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 AL137843.1-201ENST00000605078 385 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.3□□□□□ -1.88
TDP1Q9NUW8 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TDP1Q9NUW8 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 Y_RNA.145-201ENST00000363527 102 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 RNU6-487P-201ENST00000365430 104 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 RNU6-622P-201ENST00000384272 103 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 RNU6-19P-201ENST00000384718 107 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC096649.2-201ENST00000416186 393 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC113618.1-201ENST00000416747 285 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 CST9LP2-201ENST00000437612 320 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC008885.1-201ENST00000514930 301 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 RNU4-77P-201ENST00000516692 156 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 CKS1BP7-201ENST00000522230 235 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 DNAJC8P1-201ENST00000554535 372 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 TGIF1P1-201ENST00000558095 802 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC025281.1-201ENST00000567026 265 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC004584.2-201ENST00000570407 410 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MIR4680-201ENST00000580906 66 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AL162730.1-201ENST00000605734 292 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 AC093732.2-201ENST00000607950 274 ntBASIC3.29□□□□□ -1.88
TDP1Q9NUW8 MIR1244-1-201ENST00000612829 85 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 199.2 ms