Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AC016727.2-201ENST00000603988 621 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AC012531.5-201ENST00000611375 151 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 SNORA43.4-201ENST00000629559 138 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AC058791.1-201ENST00000608412 3198 ntBASIC3.56□□□□□ -1.84
PCIF1Q9H4Z3 AC066616.2-201ENST00000559334 1481 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 SET-203ENST00000372688 801 ntTSL 2 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 RNU6-843P-201ENST00000384454 104 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 MIR544A-201ENST00000384855 91 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 SNORA69.1-201ENST00000390904 137 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AL357075.1-201ENST00000404107 726 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.592-201ENST00000410274 109 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AC005326.1-201ENST00000429197 123 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 RPL21P2-201ENST00000440049 481 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 CEACAMP4-201ENST00000457676 421 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 RPL30P1-201ENST00000488676 339 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.715-201ENST00000517082 110 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AC131281.1-201ENST00000522984 164 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AC010928.2-201ENST00000588017 287 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AC006111.3-201ENST00000622137 383 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 AL136164.4-201ENST00000625013 2135 ntBASIC3.55□□□□□ -1.84
PCIF1Q9H4Z3 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 RBBP8P1-201ENST00000449447 1844 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 RNA5SP72-201ENST00000364442 117 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.380-201ENST00000365663 111 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 RNU6-1286P-201ENST00000383871 107 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 Y_RNA.574-201ENST00000384766 95 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 MIR190B-201ENST00000401119 79 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 MTCYBP2-201ENST00000407745 171 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 MIR1252-201ENST00000408861 65 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 RNA5SP229-201ENST00000410809 99 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 SNRPGP7-201ENST00000469016 106 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 RPS4XP22-201ENST00000480755 780 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 AF186996.7-201ENST00000492781 209 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 RPL23AP78-201ENST00000599928 470 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 AL355297.3-201ENST00000604082 446 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 PRR13P7-201ENST00000605538 430 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 AC100812.1-201ENST00000607622 580 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 AL021879.1-201ENST00000611756 288 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 SCARNA4-201ENST00000629045 128 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 MIR3529-201ENST00000637713 78 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
PCIF1Q9H4Z3 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RNU4-9P-201ENST00000364951 139 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RNU6-622P-201ENST00000384272 103 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 MIR628-201ENST00000385229 95 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RNA5SP120-201ENST00000410900 112 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 EIF1AXP1-201ENST00000419267 435 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC245291.1-201ENST00000419501 328 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RPS3AP12-201ENST00000443616 753 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 MTCO3P8-201ENST00000453691 755 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 TOMM22P6-201ENST00000465035 409 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AP002884.2-201ENST00000471647 395 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RPL23AP75-201ENST00000491601 451 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC093852.1-201ENST00000503587 266 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RNU5F-8P-201ENST00000515941 111 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 CKS1BP7-201ENST00000522230 235 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 MIR2682-201ENST00000580305 110 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC090897.2-201ENST00000581715 130 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 MIR3149-201ENST00000584629 83 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 AC091152.3-201ENST00000604227 325 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 RPL23AP88-201ENST00000605759 454 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 HAUS6P2-201ENST00000433254 2404 ntBASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
PCIF1Q9H4Z3 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.85
PCIF1Q9H4Z3 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.52□□□□□ -1.85
PCIF1Q9H4Z3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms