Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC078809.1-201ENST00000427601 140 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 USP9YP29-201ENST00000445112 563 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 RPS29P15-201ENST00000458329 171 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 RPS27P27-201ENST00000498779 255 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 RNU6-445P-201ENST00000516949 107 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 AL391840.1-201ENST00000571144 367 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 RSL24D1P11-201ENST00000591045 491 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 BNIP3P25-201ENST00000596023 559 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 AL022345.1-201ENST00000607292 135 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 AC009831.4-201ENST00000620744 325 ntBASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
CHMP4AQ9BY43 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 SNORA51.11-201ENST00000384442 131 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AC018634.1-201ENST00000437554 401 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 RNU6-956P-201ENST00000458868 103 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 TRBV12-1-201ENST00000479785 344 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 HSPE1P18-201ENST00000517602 280 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AC008752.3-201ENST00000588113 712 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AL078605.1-201ENST00000603529 500 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AL034555.1-201ENST00000604816 211 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 AC022079.1-201ENST00000621546 602 ntBASIC2.89□□□□□ -1.95
CHMP4AQ9BY43 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AC092268.1-201ENST00000342691 405 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 RNU6-160P-201ENST00000384591 107 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 RN7SKP61-201ENST00000410642 295 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 SNORD56-201ENST00000413522 71 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AL358934.1-201ENST00000432346 324 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AL031667.1-201ENST00000440222 725 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AL122001.1-201ENST00000457027 370 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 MTND3P5-201ENST00000512798 333 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 RNU5F-2P-201ENST00000516066 82 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AC087241.2-201ENST00000535801 324 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AC004908.3-201ENST00000610248 625 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 MIR6873-201ENST00000622788 63 ntBASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.88□□□□□ -1.95
CHMP4AQ9BY43 AL354685.2-201ENST00000448218 1447 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-37P-201ENST00000362692 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-11P-201ENST00000364234 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-25P-201ENST00000383873 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-1-201ENST00000383898 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-48P-201ENST00000384161 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-36P-201ENST00000384172 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-4P-201ENST00000384205 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-5P-201ENST00000384238 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-3P-201ENST00000384314 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-16P-201ENST00000384385 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-15P-201ENST00000384534 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-2-201ENST00000384627 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-29P-201ENST00000384637 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-9-201ENST00000384776 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-33P-201ENST00000384793 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-1106P-201ENST00000390845 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RPS29P13-201ENST00000402041 169 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AL139415.2-201ENST00000431968 163 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 SNRPFP3-201ENST00000457792 225 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU2-69P-201ENST00000516061 100 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-567P-201ENST00000516746 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 MIR4713-201ENST00000582691 75 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AC119751.7-201ENST00000600494 245 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 AC087752.4-201ENST00000605911 462 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-6P-201ENST00000606623 107 ntBASIC2.87□□□□□ -1.95
CHMP4AQ9BY43 RNU6-517P-201ENST00000384362 110 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 MIR1283-2-201ENST00000408621 87 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 RN7SKP223-201ENST00000410582 62 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 HMGN2P19-201ENST00000425149 265 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 C1DP4-201ENST00000455429 424 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 ARL2BPP4-201ENST00000506854 471 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 MIR4648-201ENST00000580107 72 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 RPL17P51-201ENST00000605218 238 ntBASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CHMP4AQ9BY43 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 CBX3P1-201ENST00000325243 554 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 RNA5SP276-201ENST00000362580 94 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 U8.2-201ENST00000363156 134 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 RNU5A-6P-201ENST00000384136 116 ntBASIC2.85□□□□□ -1.95
CHMP4AQ9BY43 RNU6-348P-201ENST00000384386 107 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms