Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 RNU6-5P-201ENST00000384238 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-3P-201ENST00000384314 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-16P-201ENST00000384385 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-15P-201ENST00000384534 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-1222P-201ENST00000384615 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-2-201ENST00000384627 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-29P-201ENST00000384637 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-9-201ENST00000384776 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-33P-201ENST00000384793 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 SNORA46.1-201ENST00000391069 153 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU2-9P-201ENST00000410194 145 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AL356379.1-201ENST00000414105 126 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 PRPS1P1-201ENST00000445305 876 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RPL23AP7-203ENST00000449021 469 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AL137159.1-201ENST00000452808 512 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AL353752.1-201ENST00000454946 260 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-377P-201ENST00000515965 102 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU2-69P-201ENST00000516061 100 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RN7SKP219-201ENST00000516825 296 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-667P-201ENST00000517186 102 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AP005435.4-201ENST00000529514 284 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AP000763.2-201ENST00000540641 163 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC018630.3-201ENST00000542637 96 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 MIR3941-201ENST00000582572 103 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 MIR4448-201ENST00000584360 86 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC007229.1-201ENST00000590455 412 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 AC078795.2-201ENST00000602835 1252 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 RNU6-6P-201ENST00000606623 107 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 YWHAEP7-203ENST00000622054 312 ntBASIC2.1□□□□□ -2.07
ZNF560Q96MR9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
ZNF560Q96MR9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 RNU6-1159P-201ENST00000362933 107 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 Y_RNA.159-201ENST00000363674 87 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 RNU6-1103P-201ENST00000384150 107 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 RNU6-611P-201ENST00000384276 104 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 RNY3P9-201ENST00000384727 106 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 SNORA16.2-201ENST00000390991 127 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 RNU2-40P-201ENST00000410833 196 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 RNU2-32P-201ENST00000411193 191 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 SCARNA18-201ENST00000459004 134 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC010493.1-201ENST00000513479 292 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 MIR5089-201ENST00000580047 84 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 APOOP1-201ENST00000604695 592 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC009318.2-201ENST00000610917 651 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC091834.1-201ENST00000614543 472 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC136475.10-201ENST00000620253 385 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 SDR42E1P4-201ENST00000620894 481 ntBASIC2.09□□□□□ -2.07
ZNF560Q96MR9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF560Q96MR9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
ZNF560Q96MR9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 Y_RNA.399-201ENST00000383955 105 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 RNU5A-6P-201ENST00000384136 116 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 MIR544A-201ENST00000384855 91 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 RNU6-1245P-201ENST00000411130 106 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 SNORD56-201ENST00000413522 71 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 MTCO2P34-201ENST00000421994 607 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 MTATP6P17-201ENST00000431030 672 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC013470.1-201ENST00000453438 462 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 RNU6-717P-201ENST00000459076 104 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 RNA5SP233-201ENST00000459153 113 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 MTND2P33-201ENST00000506452 1031 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC115990.1-201ENST00000526957 301 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AP003392.2-201ENST00000527269 208 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC022616.8-201ENST00000533569 253 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AC008536.2-201ENST00000607284 349 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AL132822.1-201ENST00000617063 513 ntBASIC2.08□□□□□ -2.08
ZNF560Q96MR9 AL162373.1-201ENST00000620433 407 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms