Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNA5SP102-201ENST00000516865 106 ntBASIC-0.42□□□□□ -2.48
LINC00643Q86TS7 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC-0.42□□□□□ -2.48
LINC00643Q86TS7 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.42□□□□□ -2.48
LINC00643Q86TS7 AC023932.2-201ENST00000603176 175 ntBASIC-0.42□□□□□ -2.48
LINC00643Q86TS7 AC016727.2-201ENST00000603988 621 ntBASIC-0.42□□□□□ -2.48
LINC00643Q86TS7 snoU2_19.1-201ENST00000362361 80 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 MIR520F-201ENST00000384824 87 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 RNU6-177P-201ENST00000411257 104 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AL591806.2-201ENST00000433122 173 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AL050341.1-201ENST00000447743 313 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AC005741.1-201ENST00000511094 432 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 MIR5695-201ENST00000579717 85 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AC104408.1-201ENST00000605241 170 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AC242628.1-201ENST00000606810 391 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AC063943.3-201ENST00000615562 356 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AL163051.2-201ENST00000618976 735 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 AC084824.4-201ENST00000620106 731 ntBASIC-0.43□□□□□ -2.48
LINC00643Q86TS7 RNU1-96P-201ENST00000364163 162 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 FGF7P8-201ENST00000402994 292 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AC123900.1-201ENST00000420390 96 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 HMGN2P34-201ENST00000437647 269 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AC016256.1-201ENST00000547971 354 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AL359821.1-201ENST00000605519 182 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AL353149.1-201ENST00000610667 244 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AL353997.5-201ENST00000618886 171 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AL596245.1-201ENST00000618994 362 ntBASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0.44□□□□□ -2.48
LINC00643Q86TS7 AL390237.1-201ENST00000404226 1415 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 MIR340-201ENST00000362125 95 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 Y_RNA.40-201ENST00000362645 93 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 MIR644A-201ENST00000385262 94 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 ARL5AP1-201ENST00000418991 388 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 MTCO3P1-205ENST00000422088 832 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 RPS15AP10-201ENST00000432472 382 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 GTF2IP3-201ENST00000433887 494 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC067940.1-201ENST00000458411 300 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC009646.1-201ENST00000510455 318 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 RNU6-947P-201ENST00000516264 106 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC106038.2-201ENST00000520706 568 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 AC104985.3-201ENST00000623479 597 ntBASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC-0.45□□□□□ -2.48
LINC00643Q86TS7 SNORD114-26-201ENST00000363543 72 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 SUGT1P1-201ENST00000379514 476 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 RNU6-514P-201ENST00000384208 107 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 MTATP6P27-201ENST00000416987 621 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 RPL37P6-201ENST00000460682 294 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 HESX1-202ENST00000473921 757 ntTSL 5 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 MED28P2-201ENST00000475771 317 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AC093519.1-201ENST00000566109 298 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 MIR4514-201ENST00000581410 57 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 AP001981.2-201ENST00000603241 418 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 OR4G1P-203ENST00000641984 1631 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 MTND4P5-201ENST00000435821 1374 ntBASIC-0.46□□□□□ -2.48
LINC00643Q86TS7 RNU6-858P-201ENST00000362436 107 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 RNU6-188P-201ENST00000364207 107 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 RNU6-657P-201ENST00000383904 107 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 MIR518A1-201ENST00000385068 85 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 C1DP2-201ENST00000418167 426 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 MTCO2P34-201ENST00000421994 607 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 MTND1P20-201ENST00000430341 950 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 RPL23AP50-201ENST00000434149 455 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 C1DP4-201ENST00000455429 424 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 RPS29P1-201ENST00000465274 159 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 AC021146.8-201ENST00000507455 733 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 SNORA70.12-201ENST00000516084 153 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 AC141557.1-201ENST00000540982 400 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 AC090502.2-201ENST00000549267 280 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 BNIP3P30-201ENST00000601184 574 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 AC080078.2-201ENST00000603766 501 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 AC008133.2-201ENST00000624540 351 ntBASIC-0.47□□□□□ -2.48
LINC00643Q86TS7 U6.101-201ENST00000637707 76 ntBASIC-0.47□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms