Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RPS3AP36-201ENST00000398190 775 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 DHFRP6-201ENST00000401776 268 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.1□□□□□ -2.39
USF3Q68DE3 C8orf59P1-201ENST00000429930 303 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.1□□□□□ -2.39
USF3Q68DE3 VN1R10P-201ENST00000447106 875 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.1□□□□□ -2.39
USF3Q68DE3 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC0.1□□□□□ -2.39
USF3Q68DE3 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC0.1□□□□□ -2.39
USF3Q68DE3 AC136618.2-201ENST00000575091 400 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.1□□□□□ -2.39
USF3Q68DE3 RNU6-858P-201ENST00000362436 107 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 RNU6-657P-201ENST00000383904 107 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 RNU6-891P-201ENST00000384280 111 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 RNU6-1300P-201ENST00000391046 108 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 RPL23AP95-201ENST00000426806 265 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 OFD1P3Y-201ENST00000453312 783 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC010631.1-201ENST00000474150 156 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC0.1□□□□□ -2.39
USF3Q68DE3 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.1□□□□□ -2.39
USF3Q68DE3 AC110760.3-202ENST00000515177 371 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 SNORA3.4-201ENST00000515969 96 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.1□□□□□ -2.39
USF3Q68DE3 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.1□□□□□ -2.39
USF3Q68DE3 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC0.1□□□□□ -2.39
USF3Q68DE3 AC093519.1-201ENST00000566109 298 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC097372.5-201ENST00000623665 376 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 AC068205.3-201ENST00000636385 468 ntBASIC0.1□□□□□ -2.39
USF3Q68DE3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.1□□□□□ -2.39
USF3Q68DE3 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6-862P-201ENST00000362804 105 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6-1210P-201ENST00000363775 107 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU1-39P-201ENST00000383897 165 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6-945P-201ENST00000383947 107 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6-348P-201ENST00000384386 107 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6-1065P-201ENST00000384513 106 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 MTND1P21-201ENST00000412991 285 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 MTCYBP15-201ENST00000433123 1127 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 snoU13.27-201ENST00000459278 104 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6-760P-201ENST00000516078 97 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNA5SP168-201ENST00000516642 112 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.09□□□□□ -2.39
USF3Q68DE3 MIR4637-201ENST00000582405 84 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 AC123767.1-202ENST00000620407 817 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.09□□□□□ -2.39
USF3Q68DE3 SNRPEP3-201ENST00000338402 276 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 snoU2_19.1-201ENST00000362361 80 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 RNU6-349P-201ENST00000362402 107 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 RNU6-637P-201ENST00000384050 107 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 MIR942-201ENST00000401111 86 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 AC063976.4-201ENST00000421971 163 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 AC104651.1-201ENST00000427559 735 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 BET1P1-201ENST00000482276 359 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 AC011005.2-201ENST00000487324 359 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.09□□□□□ -2.4
USF3Q68DE3 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.09□□□□□ -2.4
USF3Q68DE3 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.09□□□□□ -2.4
USF3Q68DE3 AC015688.6-201ENST00000577737 104 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 AC069114.2-201ENST00000604699 304 ntBASIC0.09□□□□□ -2.4
USF3Q68DE3 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.09□□□□□ -2.4
USF3Q68DE3 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.08□□□□□ -2.4
USF3Q68DE3 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.08□□□□□ -2.4
USF3Q68DE3 RNU6-1010P-201ENST00000362757 107 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 RNU6-923P-201ENST00000364753 107 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AL353752.1-201ENST00000454946 260 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AC105758.1-201ENST00000506038 399 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AC008628.1-201ENST00000508663 265 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AC009646.1-201ENST00000510455 318 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.08□□□□□ -2.4
USF3Q68DE3 RNU5A-4P-201ENST00000516588 111 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.08□□□□□ -2.4
USF3Q68DE3 AC011451.2-201ENST00000604303 598 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AC092354.1-201ENST00000606057 376 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AC093788.1-201ENST00000609356 927 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 AC090617.9-201ENST00000623751 147 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 SGO1P1-201ENST00000603525 1447 ntBASIC0.08□□□□□ -2.4
USF3Q68DE3 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 SNORA72.2-201ENST00000365028 127 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 Y_RNA.332-201ENST00000365271 113 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 SNORA4.3-201ENST00000365564 137 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RNU6-432P-201ENST00000384196 109 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 MIR29B2-201ENST00000385055 81 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.07□□□□□ -2.4
USF3Q68DE3 MTCO3P1-205ENST00000422088 832 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 MTND1P28-201ENST00000435623 950 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 CYCTP-201ENST00000504253 315 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.07□□□□□ -2.4
USF3Q68DE3 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.07□□□□□ -2.4
USF3Q68DE3 MIR3664-201ENST00000579074 99 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC090330.1-201ENST00000588646 764 ntBASIC0.07□□□□□ -2.4
USF3Q68DE3 AC022432.1-201ENST00000595739 310 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms