Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BX284668.6-201ENST00000606899 438 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.55□□□□□ -1.84
USP39Q53GS9 MIR8076-201ENST00000611401 83 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 U6.92-201ENST00000636464 89 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP39Q53GS9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
USP39Q53GS9 AC009812.4-201ENST00000569134 1805 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USP39Q53GS9 TNPO1P3-201ENST00000436471 2662 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USP39Q53GS9 AF117829.1-206ENST00000621883 3802 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.54□□□□□ -1.84
USP39Q53GS9 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 RNU5A-1-201ENST00000362698 116 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 RNU6-1266P-201ENST00000362794 105 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 U3.6-201ENST00000363622 211 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 RNU6-827P-201ENST00000365553 106 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 Y_RNA.541-201ENST00000384640 113 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 DBIP2-201ENST00000419076 262 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AC006028.1-201ENST00000438379 402 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 RPS29P31-201ENST00000446147 164 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.54□□□□□ -1.84
USP39Q53GS9 CBX3P4-201ENST00000538909 354 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AC004024.1-201ENST00000549244 247 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AL442163.3-201ENST00000554110 156 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 MIR3186-201ENST00000577404 85 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP39Q53GS9 MIR4738-201ENST00000579134 87 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 MIR376A1-201ENST00000616574 68 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AL360181.4-201ENST00000621752 134 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.54□□□□□ -1.84
USP39Q53GS9 AC243829.7-201ENST00000633081 225 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP39Q53GS9 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP39Q53GS9 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP39Q53GS9 AC073073.2-201ENST00000609827 2578 ntBASIC3.54□□□□□ -1.84
USP39Q53GS9 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP39Q53GS9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
USP39Q53GS9 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP39Q53GS9 AL079305.1-201ENST00000623159 3008 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.53□□□□□ -1.84
USP39Q53GS9 LINC02555-201ENST00000563933 1951 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 SNORD113-1-201ENST00000365321 69 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 U3.26-201ENST00000391236 204 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 RPS29P13-201ENST00000402041 169 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AL513331.1-201ENST00000411908 397 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.53□□□□□ -1.84
USP39Q53GS9 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.53□□□□□ -1.84
USP39Q53GS9 AL117339.3-201ENST00000418733 162 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.53□□□□□ -1.84
USP39Q53GS9 MTCO3P29-201ENST00000432119 779 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.53□□□□□ -1.84
USP39Q53GS9 AL513124.1-201ENST00000450410 614 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 Y_RNA.644-201ENST00000459006 113 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AP001486.1-201ENST00000463339 476 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 RPS29P27-201ENST00000463711 170 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AL049873.1-201ENST00000480540 376 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 Y_RNA.674-201ENST00000516362 113 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 Y_RNA.703-201ENST00000516846 111 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
USP39Q53GS9 AC084851.1-201ENST00000529105 249 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.53□□□□□ -1.84
USP39Q53GS9 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.53□□□□□ -1.84
USP39Q53GS9 AC010620.2-201ENST00000600135 313 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 MIR7112-201ENST00000616126 65 ntBASIC3.53□□□□□ -1.84
USP39Q53GS9 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.53□□□□□ -1.84
USP39Q53GS9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
USP39Q53GS9 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP39Q53GS9 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP39Q53GS9 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
USP39Q53GS9 Y_RNA.33-201ENST00000362591 102 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RNU6-1159P-201ENST00000362933 107 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RNU6-395P-201ENST00000365662 106 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 Y_RNA.439-201ENST00000384119 94 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
USP39Q53GS9 Y_RNA.581-201ENST00000391017 97 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RNU6-493P-201ENST00000391321 108 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RPL21P75-201ENST00000396599 483 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RPL21P28-201ENST00000401418 483 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AL591034.1-201ENST00000407447 340 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.52□□□□□ -1.85
USP39Q53GS9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.52□□□□□ -1.85
USP39Q53GS9 AL590556.1-201ENST00000423231 483 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP39Q53GS9 AC006989.1-201ENST00000427212 131 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 BX679664.1-201ENST00000434429 253 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.52□□□□□ -1.85
USP39Q53GS9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP39Q53GS9 RPL21P39-201ENST00000463605 483 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AC132942.1-201ENST00000486753 483 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AC093591.1-201ENST00000491435 481 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RPL21P16-201ENST00000495531 483 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AC093663.1-201ENST00000497190 394 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.52□□□□□ -1.85
USP39Q53GS9 Y_RNA.683-201ENST00000516508 93 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP39Q53GS9 AL590705.4-201ENST00000532209 134 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 AP002770.2-201ENST00000543613 532 ntBASIC3.52□□□□□ -1.85
USP39Q53GS9 HMGB1P14-201ENST00000557424 591 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 155 ms