Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SNORD116-28-201ENST00000516123 91 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNU6-678P-201ENST00000516832 109 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 SUMO2P14-201ENST00000604488 293 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC112220.2-201ENST00000605513 533 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC093788.1-201ENST00000609356 927 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 AC009268.2-201ENST00000621925 457 ntBASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.21□□□□□ -2.38
CHD9Q3L8U1 RNU6-23P-201ENST00000363283 107 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU4-32P-201ENST00000363404 141 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.514-201ENST00000384528 112 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 HGF-207ENST00000453018 721 ntTSL 3 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC010409.1-201ENST00000487382 476 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 ACA64.5-201ENST00000516207 127 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU5A-4P-201ENST00000516588 111 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 CENPUP1-201ENST00000526649 1202 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 TRAV32-201ENST00000553993 340 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 MIR378F-201ENST00000578143 78 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AL357094.1-201ENST00000603845 844 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC098614.4-201ENST00000607601 462 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC013476.2-201ENST00000614456 459 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 SNORD114-6-201ENST00000364393 72 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.559-201ENST00000384686 107 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 MIR200A-201ENST00000384875 90 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU2-64P-201ENST00000411315 191 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RPS26P5-201ENST00000418544 335 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RAC1P6-201ENST00000423911 575 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 SKA2P1-201ENST00000425592 390 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC007919.1-201ENST00000429380 217 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC026410.2-201ENST00000460281 156 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC145146.1-201ENST00000496370 254 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC016256.1-201ENST00000547971 354 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AP001596.2-201ENST00000608410 312 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC084824.5-201ENST00000612009 413 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.804-201ENST00000615262 101 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 MIR365A-201ENST00000362260 87 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 MIR302D-201ENST00000362275 68 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU6-1066P-201ENST00000363573 105 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNY4P6-201ENST00000363667 96 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU6-945P-201ENST00000383947 107 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU6-1126P-201ENST00000384002 107 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 DHFRP6-201ENST00000401776 268 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC005094.1-201ENST00000440420 368 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RPEP5-201ENST00000441137 268 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 MTND5P13-201ENST00000513046 1079 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU6-782P-201ENST00000516852 104 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.2□□□□□ -2.38
CHD9Q3L8U1 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
CHD9Q3L8U1 RNU6-188P-201ENST00000364207 107 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 MIR194-1-201ENST00000384892 85 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 MIR605-201ENST00000385078 83 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 MIR942-201ENST00000401111 86 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 SNORD99-201ENST00000408612 74 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 RNU6-1054P-201ENST00000411293 104 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC139712.2-201ENST00000424302 339 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC104651.1-201ENST00000427559 735 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 RPL23AP54-201ENST00000495129 419 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC105758.1-201ENST00000506038 399 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC097473.1-201ENST00000508142 408 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC074344.1-201ENST00000512823 224 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 RAB11AP2-201ENST00000545905 639 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC115989.2-201ENST00000578640 563 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 MIR3167-201ENST00000579623 85 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 MIR4637-201ENST00000582405 84 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.19□□□□□ -2.38
CHD9Q3L8U1 RNA5SP98-201ENST00000363158 137 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC007435.1-201ENST00000421086 415 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.19□□□□□ -2.38
CHD9Q3L8U1 RPL37P6-201ENST00000460682 294 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 RNU6-165P-201ENST00000517170 99 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 MTCO2P15-201ENST00000532655 656 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 AC011155.2-201ENST00000623202 216 ntBASIC0.19□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.52-201ENST00000362760 96 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU6-1019P-201ENST00000364424 107 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 SNORD1A-201ENST00000364968 72 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU6-657P-201ENST00000383904 107 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU6-1005P-201ENST00000384519 107 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU1-119P-201ENST00000391122 165 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC009518.2-201ENST00000418056 731 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC063976.4-201ENST00000421971 163 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 HSPE1P9-201ENST00000440046 311 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC079140.3-201ENST00000511111 550 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 MIR5094-201ENST00000578766 85 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms