Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NDUFB4P4-201ENST00000404822 243 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 MTND3P9-201ENST00000429526 346 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 RPL23AP22-201ENST00000437556 453 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AL031183.1-201ENST00000457667 207 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 CBX3P8-201ENST00000532412 525 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 MIR5004-201ENST00000579078 107 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC011471.1-201ENST00000585766 187 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC006504.6-201ENST00000590142 199 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC019159.1-201ENST00000605094 187 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 AC009318.2-201ENST00000610917 651 ntBASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.09□□□□□ -1.91
PTCHD3Q3KNS1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
PTCHD3Q3KNS1 AC110774.1-201ENST00000623567 2018 ntBASIC3.09□□□□□ -1.92
PTCHD3Q3KNS1 AC010889.1-201ENST00000566193 2666 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 SNORD56.1-201ENST00000362913 68 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.132-201ENST00000363421 102 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RNU1-105P-201ENST00000363470 161 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-595P-201ENST00000363944 107 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RNU1-115P-201ENST00000365329 160 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 SNORA22B-201ENST00000383876 138 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.428-201ENST00000384078 102 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-19P-201ENST00000384718 107 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 Y_RNA.577-201ENST00000384794 101 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RPL32P35-201ENST00000415214 394 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 NUP35P1-201ENST00000422734 947 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 PTGES3P4-201ENST00000426243 356 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 TRIAP1P1-201ENST00000427062 225 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 AC099799.1-201ENST00000439809 192 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RN7SL863P-201ENST00000462370 296 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 FO393415.2-201ENST00000480085 343 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 AP001025.1-201ENST00000486139 332 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 AC006445.1-201ENST00000491925 405 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-699P-201ENST00000517081 110 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 AC005014.2-201ENST00000607795 599 ntBASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PTCHD3Q3KNS1 MTND5P27-201ENST00000428871 1720 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 RNY1P16-201ENST00000363063 111 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 RNU1-101P-201ENST00000391171 127 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC008267.5-201ENST00000424928 265 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 RPL23AP95-201ENST00000426806 265 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC012308.1-201ENST00000451232 178 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC079354.2-201ENST00000453523 154 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL441985.1-201ENST00000457727 251 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC109925.1-201ENST00000478069 331 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 SNORD116.3-201ENST00000517176 78 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 RN7SKP295-201ENST00000517264 153 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC016256.1-201ENST00000547971 354 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL158827.2-201ENST00000602494 330 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL391813.1-201ENST00000603098 260 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL162274.2-201ENST00000614406 332 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL691447.3-201ENST00000635020 330 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL079305.1-201ENST00000623159 3008 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AL365361.1-201ENST00000566942 3481 ntBASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PTCHD3Q3KNS1 SNORD32A-201ENST00000364805 84 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-1032P-201ENST00000384100 107 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 RNU6-622P-201ENST00000384272 103 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 RNU4-47P-201ENST00000410876 114 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 EIF1AXP1-201ENST00000419267 435 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AL353705.1-201ENST00000433468 480 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MTND4P19-201ENST00000446659 478 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AL031659.1-201ENST00000447075 539 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AL513124.1-201ENST00000450410 614 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 AC006483.1-201ENST00000487308 313 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 RPL30P10-201ENST00000488148 337 ntBASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.06□□□□□ -1.92
PTCHD3Q3KNS1 SNORA25.10-201ENST00000515926 124 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 188.4 ms