Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MTND3P10-201ENST00000450967 341 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RNU6-329P-201ENST00000459618 107 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC008571.1-201ENST00000467232 300 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AP001025.1-201ENST00000486139 332 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC018437.1-201ENST00000492214 406 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC008628.2-201ENST00000502605 298 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RNA5SP458-201ENST00000516188 119 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RNA5SP148-201ENST00000516527 94 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC010186.2-204ENST00000537668 439 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC107016.2-201ENST00000547968 190 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 MIR3672-201ENST00000584290 82 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC005046.1-201ENST00000608515 625 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC096772.1-201ENST00000609146 564 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AC093913.1-201ENST00000614178 329 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 AL359854.1-201ENST00000614203 1594 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL28A1Q2UY09 RBBP8P1-201ENST00000449447 1844 ntBASIC2.72□□□□□ -1.97
COL28A1Q2UY09 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.72□□□□□ -1.97
COL28A1Q2UY09 Y_RNA.4-201ENST00000362333 112 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 RNU6-827P-201ENST00000365553 106 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 RNU6-767P-201ENST00000384132 107 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 SNORA67.4-201ENST00000384688 142 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 SNORD73A-201ENST00000386062 65 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AL591043.1-201ENST00000432461 424 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 RPS15AP10-201ENST00000432472 382 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AL513043.1-201ENST00000439124 535 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AL031274.1-201ENST00000450334 232 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AP001324.2-201ENST00000461163 319 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC025465.4-201ENST00000513422 638 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC109329.1-201ENST00000518744 317 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC090897.2-201ENST00000581715 130 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 RPS15AP11-201ENST00000594193 385 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC022306.2-201ENST00000617563 647 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC244517.12-201ENST00000623581 663 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC092608.2-201ENST00000624427 218 ntBASIC2.71□□□□□ -1.98
COL28A1Q2UY09 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.71□□□□□ -1.98
COL28A1Q2UY09 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RNU6-1010P-201ENST00000362757 107 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RNU6-336P-201ENST00000364891 107 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 MIR592-201ENST00000384959 97 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 MTND3P8-201ENST00000412909 339 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AL645568.3-201ENST00000433683 316 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC007969.2-201ENST00000441891 191 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC124916.1-201ENST00000444020 547 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC012308.1-201ENST00000451232 178 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RPS3P1-201ENST00000456781 192 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RNU6-1037P-201ENST00000459571 107 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RPL23AP49-201ENST00000492925 468 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RNU4-49P-201ENST00000516080 140 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 RNU6-1332P-201ENST00000516666 104 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC079598.5-201ENST00000547460 117 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC026371.1-201ENST00000551867 419 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 MIR3942-201ENST00000585264 109 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC019159.1-201ENST00000605094 187 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 MIR7157-201ENST00000635801 60 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC241585.2-209ENST00000638217 143 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 AC096644.4-201ENST00000563417 2912 ntBASIC2.7□□□□□ -1.98
COL28A1Q2UY09 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.7□□□□□ -1.98
COL28A1Q2UY09 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 CBX3P1-201ENST00000325243 554 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 RNU6-845P-201ENST00000362578 103 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 RNU6-527P-201ENST00000363425 104 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 Y_RNA.301-201ENST00000364990 103 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 SNORA32.2-201ENST00000384049 122 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 RN7SKP32-201ENST00000410167 303 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 Z98742.3-201ENST00000418637 326 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 MTND4LP16-201ENST00000440828 295 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 PMCHL2-203ENST00000457791 237 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 AC092436.3-201ENST00000511788 257 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 MIR4742-201ENST00000581069 85 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 ELOCP5-201ENST00000604924 333 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 AC064836.2-201ENST00000609491 462 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 MIR7515-201ENST00000637837 67 ntBASIC2.69□□□□□ -1.98
COL28A1Q2UY09 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL28A1Q2UY09 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms