Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PTP4A1P4-201ENST00000512479 322 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-347P-201ENST00000516658 105 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 RNU6-1271P-201ENST00000517049 105 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 SNORA25.17-201ENST00000517184 124 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 MTND4P7-201ENST00000523876 130 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AP005435.4-201ENST00000529514 284 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC023442.1-201ENST00000531247 422 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 APOOP3-201ENST00000536787 586 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.02□□□□□ -2.09
COL4A4P53420 MIR4716-201ENST00000579628 84 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.02□□□□□ -2.09
COL4A4P53420 MIR4775-201ENST00000581168 75 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL355598.1-201ENST00000604169 202 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 BX248123.2-201ENST00000606318 124 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 Z82243.1-201ENST00000609432 473 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 AC083806.3-201ENST00000614016 455 ntBASIC2.02□□□□□ -2.09
COL4A4P53420 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.02□□□□□ -2.09
COL4A4P53420 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
COL4A4P53420 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL4A4P53420 VTRNA1-1-201ENST00000363120 99 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 Y_RNA.158-201ENST00000363651 101 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU6-379P-201ENST00000363813 104 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 Y_RNA.188-201ENST00000363952 111 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU6-1032P-201ENST00000384100 107 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU6-505P-201ENST00000384427 107 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU6-441P-201ENST00000384545 106 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU6-831P-201ENST00000384548 107 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 MIR558-201ENST00000384920 94 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 MIR454-201ENST00000390180 115 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL4A4P53420 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.01□□□□□ -2.09
COL4A4P53420 AL358453.1-201ENST00000422522 250 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RPL7L1P10-201ENST00000427790 463 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 UBE2V1P13-201ENST00000436983 439 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL4A4P53420 HMGB1P12-201ENST00000438594 598 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RPL23AP58-201ENST00000440453 469 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.01□□□□□ -2.09
COL4A4P53420 AC107399.1-201ENST00000451226 265 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AL583843.1-201ENST00000456070 346 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.01□□□□□ -2.09
COL4A4P53420 ELOCP24-201ENST00000456370 334 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU7-59P-201ENST00000459101 61 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU7-95P-201ENST00000459222 64 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC080013.2-201ENST00000460866 323 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC006512.1-201ENST00000468816 291 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.01□□□□□ -2.09
COL4A4P53420 Y_RNA.665-201ENST00000516177 98 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU2-10P-201ENST00000516375 211 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 RNU6-988P-201ENST00000519081 107 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC022634.1-201ENST00000520765 532 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
COL4A4P53420 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.01□□□□□ -2.09
COL4A4P53420 OR4P1P-201ENST00000530808 1136 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.01□□□□□ -2.09
COL4A4P53420 AL163153.1-201ENST00000554223 283 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC008269.2-201ENST00000561915 1105 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.01□□□□□ -2.09
COL4A4P53420 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.01□□□□□ -2.09
COL4A4P53420 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.01□□□□□ -2.09
COL4A4P53420 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.01□□□□□ -2.09
COL4A4P53420 AL109918.3-201ENST00000603072 338 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC012531.5-201ENST00000611375 151 ntBASIC2.01□□□□□ -2.09
COL4A4P53420 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.01□□□□□ -2.09
COL4A4P53420 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
COL4A4P53420 AP001148.1-201ENST00000624124 2359 ntBASIC2□□□□□ -2.09
COL4A4P53420 Y_RNA.5-201ENST00000362334 102 ntBASIC2□□□□□ -2.09
COL4A4P53420 RNU6-28P-201ENST00000362378 107 ntBASIC2□□□□□ -2.09
COL4A4P53420 RNY1-201ENST00000364228 113 ntBASIC2□□□□□ -2.09
COL4A4P53420 Y_RNA.414-201ENST00000384011 101 ntBASIC2□□□□□ -2.09
COL4A4P53420 Y_RNA.530-201ENST00000384587 101 ntBASIC2□□□□□ -2.09
COL4A4P53420 Y_RNA.557-201ENST00000384680 107 ntBASIC2□□□□□ -2.09
COL4A4P53420 MIR124-3-201ENST00000384866 87 ntBASIC2□□□□□ -2.09
COL4A4P53420 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2□□□□□ -2.09
COL4A4P53420 SNORA67.5-201ENST00000391036 107 ntBASIC2□□□□□ -2.09
COL4A4P53420 MIR548K-201ENST00000408406 116 ntBASIC2□□□□□ -2.09
COL4A4P53420 RNU2-29P-201ENST00000410423 189 ntBASIC2□□□□□ -2.09
COL4A4P53420 HMGB3P2-201ENST00000411913 584 ntBASIC2□□□□□ -2.09
COL4A4P53420 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2□□□□□ -2.09
COL4A4P53420 AC114491.1-201ENST00000416095 246 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2□□□□□ -2.09
COL4A4P53420 AL591212.2-201ENST00000433923 257 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL731563.1-201ENST00000442202 214 ntBASIC2□□□□□ -2.09
COL4A4P53420 AC009237.8-201ENST00000445492 379 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL353691.1-201ENST00000451332 387 ntBASIC2□□□□□ -2.09
COL4A4P53420 ATP5J2P3-201ENST00000451550 258 ntBASIC2□□□□□ -2.09
COL4A4P53420 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2□□□□□ -2.09
COL4A4P53420 AL049714.1-201ENST00000466686 347 ntBASIC2□□□□□ -2.09
COL4A4P53420 RPL23AP41-201ENST00000484754 458 ntBASIC2□□□□□ -2.09
COL4A4P53420 TRBVA-201ENST00000498804 316 ntBASIC2□□□□□ -2.09
COL4A4P53420 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2□□□□□ -2.09
COL4A4P53420 AC079140.5-201ENST00000507882 310 ntBASIC2□□□□□ -2.09
COL4A4P53420 RNA5SP337-201ENST00000517007 109 ntBASIC2□□□□□ -2.09
COL4A4P53420 Y_RNA.720-201ENST00000517166 92 ntBASIC2□□□□□ -2.09
COL4A4P53420 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2□□□□□ -2.09
COL4A4P53420 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 158.6 ms