Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIR548F5-201ENST00000408421 86 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 RPL37P10-201ENST00000412884 288 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AL590632.1-201ENST00000424289 371 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AC105272.1-201ENST00000438604 198 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 DAP3P1-201ENST00000441522 278 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 Y_RNA.635-201ENST00000459041 101 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 RPS27P27-201ENST00000498779 255 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AC116337.1-201ENST00000509680 687 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 RNU6-277P-201ENST00000516272 106 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 SNORA31.23-201ENST00000517219 133 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.83□□□□□ -1.96
PTPN9P43378 AC103996.1-201ENST00000555468 102 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.83□□□□□ -1.96
PTPN9P43378 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.83□□□□□ -1.96
PTPN9P43378 AC008739.2-201ENST00000597006 317 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.83□□□□□ -1.96
PTPN9P43378 C8orf59P2-201ENST00000603441 271 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AL356157.2-201ENST00000605122 111 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AL161423.1-201ENST00000613700 262 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AC024581.2-201ENST00000619986 252 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 UCA1.1-201ENST00000620952 75 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AL359697.1-201ENST00000624879 587 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 AL137790.1-201ENST00000634283 177 ntBASIC2.83□□□□□ -1.96
PTPN9P43378 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
PTPN9P43378 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.82□□□□□ -1.96
PTPN9P43378 RNU6-797P-201ENST00000363101 109 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 RNU6-527P-201ENST00000363425 104 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 RNU6-622P-201ENST00000384272 103 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 Y_RNA.482-201ENST00000384377 111 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
PTPN9P43378 NDUFB4P4-201ENST00000404822 243 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 COTL1P1-201ENST00000422309 375 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.82□□□□□ -1.96
PTPN9P43378 RNU7-187P-201ENST00000458985 68 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 RN7SL297P-201ENST00000483161 293 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 GZMAP1-201ENST00000503054 631 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.82□□□□□ -1.96
PTPN9P43378 RN7SKP24-201ENST00000515888 284 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 SCARNA11.3-201ENST00000517276 130 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.82□□□□□ -1.96
PTPN9P43378 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.82□□□□□ -1.96
PTPN9P43378 ELOCP29-201ENST00000588193 334 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 POLR3GP2-201ENST00000588366 668 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 AC019159.1-201ENST00000605094 187 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 AC098657.3-201ENST00000620434 263 ntBASIC2.82□□□□□ -1.96
PTPN9P43378 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
PTPN9P43378 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PTPN9P43378 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.81□□□□□ -1.96
PTPN9P43378 RNU1-109P-201ENST00000383960 147 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 MIR147B-201ENST00000390185 80 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 RNU6-1245P-201ENST00000411130 106 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 RNU6-325P-201ENST00000411132 105 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 RPS3AP52-201ENST00000435639 297 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC007969.2-201ENST00000441891 191 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC012308.1-201ENST00000451232 178 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 GSTA11P-201ENST00000452866 669 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.81□□□□□ -1.96
PTPN9P43378 RPL9P9-202ENST00000466501 579 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 RPL31P41-201ENST00000477967 372 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AP001025.1-201ENST00000486139 332 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 SEM1P1-201ENST00000506694 209 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.81□□□□□ -1.96
PTPN9P43378 SMURF2P1-201ENST00000514992 481 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 SNORA31.18-201ENST00000517043 134 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 RNU1-54P-201ENST00000517181 120 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.81□□□□□ -1.96
PTPN9P43378 LARP7P3-201ENST00000579888 337 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC090897.2-201ENST00000581715 130 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.81□□□□□ -1.96
PTPN9P43378 AC124303.1-201ENST00000605703 360 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC096772.1-201ENST00000609146 564 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 AC002064.3-201ENST00000623448 346 ntBASIC2.81□□□□□ -1.96
PTPN9P43378 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PTPN9P43378 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
PTPN9P43378 RNU6-596P-201ENST00000365395 98 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 Y_RNA.356-201ENST00000365475 113 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 Y_RNA.387-201ENST00000383918 102 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 RNU6-933P-201ENST00000384424 107 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 U3.26-201ENST00000391236 204 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 AP000275.1-201ENST00000411943 390 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 AC004383.1-201ENST00000438135 289 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.8□□□□□ -1.96
PTPN9P43378 PCMTD1P1-201ENST00000455560 355 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 SNORD5.1-201ENST00000458800 75 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN9P43378 RNU6-1016P-201ENST00000516689 94 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN9P43378 AC109329.1-201ENST00000518744 317 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.8□□□□□ -1.96
PTPN9P43378 AC023043.3-201ENST00000593113 385 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 AL033523.1-201ENST00000605153 153 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 AC018889.1-201ENST00000605372 397 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 MIR1302-1-201ENST00000637932 143 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 AC112487.2-201ENST00000637950 304 ntBASIC2.8□□□□□ -1.96
PTPN9P43378 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PTPN9P43378 RBBP8P1-201ENST00000449447 1844 ntBASIC2.79□□□□□ -1.96
PTPN9P43378 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.79□□□□□ -1.96
PTPN9P43378 VTRNA1-1-201ENST00000363120 99 ntBASIC2.79□□□□□ -1.96
PTPN9P43378 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms