Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC233263.6-201ENST00000631132 1963 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.66□□□□□ -1.98
HOXD3P31249 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXD3P31249 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD3P31249 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.66□□□□□ -1.98
HOXD3P31249 AC068647.1-201ENST00000489539 2265 ntBASIC2.66□□□□□ -1.98
HOXD3P31249 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD3P31249 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HOXD3P31249 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXD3P31249 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.65□□□□□ -1.98
HOXD3P31249 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.65□□□□□ -1.98
HOXD3P31249 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.65□□□□□ -1.98
HOXD3P31249 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXD3P31249 Y_RNA.39-201ENST00000362620 98 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 MIR544A-201ENST00000384855 91 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 RNU6-823P-201ENST00000391042 103 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AL133475.1-201ENST00000404414 305 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 RNU2-49P-201ENST00000410666 184 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXD3P31249 MTCYBP10-201ENST00000424905 650 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD3P31249 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.65□□□□□ -1.99
HOXD3P31249 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD3P31249 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.65□□□□□ -1.99
HOXD3P31249 AL031183.1-201ENST00000457667 207 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AP001486.1-201ENST00000463339 476 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AP001025.1-201ENST00000486139 332 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.65□□□□□ -1.99
HOXD3P31249 AC015911.1-201ENST00000495111 156 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD3P31249 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD3P31249 FCF1P8-201ENST00000510322 597 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 COX6CP5-201ENST00000527162 228 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AC023442.1-201ENST00000531247 422 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HOXD3P31249 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HOXD3P31249 AC009163.5-201ENST00000575421 637 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD3P31249 AC060766.3-201ENST00000591442 263 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 VN1R107P-201ENST00000601784 209 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 MIR7112-201ENST00000616126 65 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 MIR8057-201ENST00000620957 69 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD3P31249 MIR3199-2-201ENST00000636243 86 ntBASIC2.65□□□□□ -1.99
HOXD3P31249 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXD3P31249 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
HOXD3P31249 AC008669.1-201ENST00000565823 2178 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD3P31249 Y_RNA.144-201ENST00000363521 113 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RNU6-799P-201ENST00000363567 107 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 Y_RNA.405-201ENST00000383979 100 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 Y_RNA.451-201ENST00000384200 100 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RNU6-708P-201ENST00000384217 107 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 Y_RNA.455-201ENST00000384230 98 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 Y_RNA.524-201ENST00000384564 100 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 Y_RNA.561-201ENST00000384694 100 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 SNORA48.5-201ENST00000391143 135 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RNU6-1140P-201ENST00000410517 106 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXD3P31249 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXD3P31249 AL357552.1-201ENST00000445254 415 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RPS29P31-201ENST00000446147 164 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD3P31249 AC112492.4-201ENST00000456549 352 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC091179.1-201ENST00000461606 579 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.64□□□□□ -1.99
HOXD3P31249 AL049873.1-201ENST00000480540 376 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RPL30P1-201ENST00000488676 339 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RPL22P13-201ENST00000493291 347 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 SNORA70.19-201ENST00000516717 90 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 ACA59.2-201ENST00000517061 156 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 RNU6-1231P-201ENST00000517185 103 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 GNAI2P1-201ENST00000541815 315 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC026333.2-201ENST00000542164 106 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC2.64□□□□□ -1.99
HOXD3P31249 AL117187.1-201ENST00000555482 181 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC2.64□□□□□ -1.99
HOXD3P31249 AC006600.1-201ENST00000572529 153 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC010928.2-201ENST00000588017 287 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC012493.2-201ENST00000595083 291 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXD3P31249 AL049781.1-201ENST00000623195 3585 ntBASIC2.64□□□□□ -1.99
HOXD3P31249 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.64□□□□□ -1.99
HOXD3P31249 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD3P31249 AL353743.1-202ENST00000431724 1695 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXD3P31249 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 SNORD32A-201ENST00000364805 84 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 RNU6-1027P-201ENST00000383998 107 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 MIR548F4-201ENST00000408515 105 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 RN7SKP111-201ENST00000410349 271 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD3P31249 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD3P31249 RPS15AP5-201ENST00000436276 388 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 AL161651.1-201ENST00000440882 223 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD3P31249 AC006026.2-201ENST00000457376 180 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 RPL23AP67-201ENST00000465341 474 ntBASIC2.63□□□□□ -1.99
HOXD3P31249 RPL30P12-201ENST00000474666 353 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms