Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SNRPEP8-201ENST00000442866 260 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AC104389.3-201ENST00000445629 235 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 NDUFB1P2-201ENST00000449477 176 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 RNU6-329P-201ENST00000459618 107 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 RPL7P43-201ENST00000478876 753 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXD4P09016 RPS27AP10-201ENST00000496103 208 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXD4P09016 AC026801.1-201ENST00000497178 464 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AC046134.1-201ENST00000514454 666 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 RNU7-30P-201ENST00000516835 62 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 RNU6-1183P-201ENST00000517054 60 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 RN7SKP256-201ENST00000517201 314 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 RN7SKP40-201ENST00000517211 242 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXD4P09016 NACAP3-201ENST00000552100 481 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AC007336.1-201ENST00000576365 3828 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 MIR3941-201ENST00000582572 103 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 AL355598.1-201ENST00000604169 202 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 FAM157A-202ENST00000615155 405 ntBASIC2.28□□□□□ -2.04
HOXD4P09016 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.28□□□□□ -2.05
HOXD4P09016 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.28□□□□□ -2.05
HOXD4P09016 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
HOXD4P09016 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
HOXD4P09016 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD4P09016 Y_RNA.166-201ENST00000363730 102 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 Y_RNA.324-201ENST00000365165 102 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 SET-203ENST00000372688 801 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXD4P09016 RNU6-1009P-201ENST00000390996 107 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 RNU6-510P-201ENST00000391239 108 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD4P09016 RNU4-53P-201ENST00000410828 140 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 PGBD4P6-201ENST00000421501 610 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 TOMM20P4-201ENST00000427861 435 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AC092427.1-202ENST00000430569 476 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AL627311.1-201ENST00000431514 115 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AC098831.1-201ENST00000440661 216 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 MTATP6P7-201ENST00000453315 681 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD4P09016 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXD4P09016 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD4P09016 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD4P09016 RNU6-864P-201ENST00000516256 108 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 SCARNA11.3-201ENST00000517276 130 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 CYCSP27-201ENST00000527643 293 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD4P09016 AC026464.5-201ENST00000562497 722 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 MIR4782-201ENST00000577987 79 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AC103810.1-201ENST00000579873 453 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 MIR4524B-201ENST00000581569 115 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AC091135.1-201ENST00000585943 307 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 APOOP1-201ENST00000604695 592 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AC123912.5-201ENST00000605470 343 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AL357078.3-201ENST00000607528 618 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXD4P09016 MIR6895-201ENST00000613497 78 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD4P09016 AC063943.3-201ENST00000615562 356 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 AL133216.2-202ENST00000634512 349 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD4P09016 AC110491.1-201ENST00000562191 2010 ntBASIC2.27□□□□□ -2.05
HOXD4P09016 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXD4P09016 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.26□□□□□ -2.05
HOXD4P09016 AC138393.1-203ENST00000327086 343 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 Y_RNA.184-201ENST00000363884 108 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 RNU6-750P-201ENST00000390946 107 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD4P09016 AL356432.1-201ENST00000405809 419 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 RN7SKP32-201ENST00000410167 303 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 RNA5SP425-201ENST00000410336 112 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 Z98742.3-201ENST00000418637 326 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 BPY2DP-201ENST00000422208 265 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXD4P09016 AC009296.1-201ENST00000443146 155 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AC011753.1-201ENST00000451001 220 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AC233279.1-201ENST00000455300 423 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 SRIP1-201ENST00000489235 288 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXD4P09016 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 RNU6-256P-201ENST00000516747 97 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 RNU6-273P-201ENST00000516937 96 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 RNU6-323P-201ENST00000521915 107 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AP000889.2-201ENST00000532684 490 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.26□□□□□ -2.05
HOXD4P09016 MIR3616-201ENST00000584070 92 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 OR1M4P-201ENST00000589199 287 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 AL645944.1-201ENST00000603857 493 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 LARP7P1-201ENST00000605576 316 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD4P09016 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXD4P09016 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.26□□□□□ -2.05
HOXD4P09016 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
HOXD4P09016 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HOXD4P09016 AC005336.3-201ENST00000623833 2679 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
HOXD4P09016 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.25□□□□□ -2.05
HOXD4P09016 Y_RNA.142-201ENST00000363491 102 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 MIR450B-201ENST00000401182 78 ntBASIC2.25□□□□□ -2.05
HOXD4P09016 AL359511.1-201ENST00000402970 211 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms