Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 SNORA31.6-201ENST00000516241 130 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 RNU1-54P-201ENST00000517181 120 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 SNORA31.23-201ENST00000517219 133 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 AC009812.2-201ENST00000517657 457 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 MIR3976-201ENST00000606807 139 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 AC019193.3-201ENST00000609144 554 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.21□□□□□ -1.9
FOXN3O00409 AC091953.5-201ENST00000622919 233 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 MIR7515-201ENST00000637837 67 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 AC241585.2-209ENST00000638217 143 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.21□□□□□ -1.9
FOXN3O00409 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
FOXN3O00409 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.21□□□□□ -1.9
FOXN3O00409 AL355596.1-201ENST00000565399 3996 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 RNU6-1180P-201ENST00000364935 107 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 SNORD42.2-201ENST00000365570 69 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 RNU6-843P-201ENST00000384454 104 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 RNU6-601P-201ENST00000384540 107 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 MIR544A-201ENST00000384855 91 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 MIR517A-201ENST00000385001 87 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 RN7SKP123-201ENST00000410732 291 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXN3O00409 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXN3O00409 PCMTD1P1-201ENST00000455560 355 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 MIR2053-201ENST00000459295 91 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 U8.21-201ENST00000459536 136 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AC133134.1-201ENST00000466800 359 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AC117440.1-201ENST00000474107 571 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXN3O00409 AC093303.1-201ENST00000514549 295 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 SNORA31.18-201ENST00000517043 134 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
FOXN3O00409 ELOCP31-201ENST00000540463 467 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXN3O00409 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXN3O00409 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.2□□□□□ -1.9
FOXN3O00409 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.2□□□□□ -1.9
FOXN3O00409 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXN3O00409 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXN3O00409 AC096577.2-201ENST00000611455 153 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AC024581.2-201ENST00000619986 252 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 AC134503.1-201ENST00000633048 54 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXN3O00409 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXN3O00409 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.2□□□□□ -1.9
FOXN3O00409 MTND5P19-201ENST00000424872 1794 ntBASIC3.2□□□□□ -1.9
FOXN3O00409 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
FOXN3O00409 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
FOXN3O00409 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
FOXN3O00409 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.2□□□□□ -1.9
FOXN3O00409 SNORD62.1-201ENST00000362541 86 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 Y_RNA.31-201ENST00000362574 102 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 U3.13-201ENST00000364804 214 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 SNORA9-201ENST00000384215 133 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 MIR606-201ENST00000384851 96 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 FABP5P14-201ENST00000437273 393 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXN3O00409 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXN3O00409 AC013470.1-201ENST00000453438 462 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 MTCO3P10-201ENST00000455912 772 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 SEM1P1-201ENST00000506694 209 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 RNU6-612P-201ENST00000516909 102 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXN3O00409 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.19□□□□□ -1.9
FOXN3O00409 MIR4765-201ENST00000585007 77 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 AL137843.1-201ENST00000605078 385 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 AL080274.1-201ENST00000605565 220 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXN3O00409 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXN3O00409 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
FOXN3O00409 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
FOXN3O00409 AL035425.3-201ENST00000564206 4996 ntBASIC3.19□□□□□ -1.9
FOXN3O00409 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXN3O00409 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
FOXN3O00409 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXN3O00409 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXN3O00409 RNA5SP374-201ENST00000362939 125 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 SNORA38.1-201ENST00000364172 131 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 MIR559-201ENST00000385188 96 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 RPL19P1-201ENST00000411635 428 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXN3O00409 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXN3O00409 Y_RNA.631-201ENST00000459607 101 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 RPL36AP48-201ENST00000485521 314 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXN3O00409 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXN3O00409 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXN3O00409 SNRPGP17-201ENST00000603780 214 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 AL162730.1-201ENST00000605734 292 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 RPL23AP88-201ENST00000605759 454 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXN3O00409 AL161423.1-201ENST00000613700 262 ntBASIC3.18□□□□□ -1.9
FOXN3O00409 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXN3O00409 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXN3O00409 RNU6-212P-201ENST00000362642 104 ntBASIC3.17□□□□□ -1.9
FOXN3O00409 Y_RNA.128-201ENST00000363391 112 ntBASIC3.17□□□□□ -1.9
FOXN3O00409 RNU6-525P-201ENST00000363685 104 ntBASIC3.17□□□□□ -1.9
FOXN3O00409 RNU6-1188P-201ENST00000363795 107 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms