Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC006445.1-201ENST00000491925 405 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 MTND4LP22-201ENST00000508209 276 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-976P-201ENST00000516086 111 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RN7SKP272-201ENST00000516988 232 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-1213P-201ENST00000517075 94 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 AC078795.3-201ENST00000602913 472 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 AC090115.4-201ENST00000609970 188 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 AC011890.2-201ENST00000613393 294 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 MIR3529-201ENST00000637713 78 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 MTND4P27-201ENST00000450813 1354 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.138-201ENST00000363462 102 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 SNORA71.1-201ENST00000364523 117 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-842P-201ENST00000384269 107 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 SNORD116-20-201ENST00000384529 92 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 MIR521-1-201ENST00000384902 87 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 MIR559-201ENST00000385188 96 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 MIR548P-201ENST00000408336 84 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC096649.2-201ENST00000416186 393 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AL161651.1-201ENST00000440882 223 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC012308.1-201ENST00000451232 178 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC091179.1-201ENST00000461606 579 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC074250.1-201ENST00000511117 192 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-581P-201ENST00000516214 105 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 SNORA31.18-201ENST00000517043 134 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-711P-201ENST00000517255 106 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC009163.5-201ENST00000575421 637 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 YPEL5P2-201ENST00000605553 359 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.812-201ENST00000610788 101 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.784-201ENST00000613803 101 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.787-201ENST00000616522 101 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.780-201ENST00000617336 101 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.801-201ENST00000619005 101 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC024581.2-201ENST00000619986 252 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 AC138627.2-201ENST00000624202 601 ntBASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.44□□□□□ -1.86
LIMCH1Q9UPQ0 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC108206.1-201ENST00000570186 4159 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 MIR369-201ENST00000362155 70 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-858P-201ENST00000362436 107 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-227P-201ENST00000362865 103 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-890P-201ENST00000384121 107 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.473-201ENST00000384333 102 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 FTH1P15-201ENST00000406984 280 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC023141.4-201ENST00000412031 328 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC074117.2-201ENST00000417130 397 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 EIF4EP2-201ENST00000422816 654 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC006946.1-201ENST00000429106 328 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 MED28P2-201ENST00000475771 317 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-264P-201ENST00000517134 104 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 MIR3944-201ENST00000581277 108 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AL133393.1-201ENST00000603277 287 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 MIR3976-201ENST00000606807 139 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC004832.5-201ENST00000608677 401 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AC092608.2-201ENST00000624427 218 ntBASIC3.43□□□□□ -1.86
LIMCH1Q9UPQ0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 FAM35CP-201ENST00000554755 2470 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.112-201ENST00000363250 102 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-1059P-201ENST00000363752 98 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 SNORA14A-201ENST00000364773 135 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 DYNLT3P1-201ENST00000378574 347 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.445-201ENST00000384168 102 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AP000275.1-201ENST00000411943 390 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 Z82205.1-201ENST00000428456 297 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 RPL23AP50-201ENST00000434149 455 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC011816.1-201ENST00000441346 546 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AL031183.1-201ENST00000457667 207 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC006483.1-201ENST00000487308 313 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC090096.1-201ENST00000489168 390 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-470P-201ENST00000515954 104 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 SNORD59.2-201ENST00000516873 68 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 ACA59.2-201ENST00000517061 156 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 SNRPGP18-201ENST00000553000 214 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC020661.2-201ENST00000560114 134 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC025281.1-201ENST00000567026 265 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AL356157.2-201ENST00000605122 111 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 AC091953.5-201ENST00000622919 233 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms